Assorted utilities and methods

Graph Viewing

Content to be added

gfa_parser

Function: characterize the common and specific node of pangenome graph

Usage:

perl gfa_parser.pl -g gfa_graph_file [-s short_path_name_T|F] -o [gfa_graph_file.csv for bandage]

help file: gfa_parser_readme.pdf

Comparison of performance between genome graph and linear reference

sim_linear_graph_map_performance.sh

Function: simulated reads, mapping with BWA or GraphAlinger, mapping performace (mapped reads, mapping ratio, unique mapping,split mapping)