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arivers committed Sep 18, 2024
1 parent fdedeeb commit 8aae12c
Showing 1 changed file with 4 additions and 8 deletions.
12 changes: 4 additions & 8 deletions .github/workflows/python-package-conda.yml
Original file line number Diff line number Diff line change
Expand Up @@ -14,9 +14,9 @@ jobs:
steps:
- uses: actions/checkout@v4
- name: Check out Repo
# uses: actions/setup-python@v5
# with:
# python-version: 3.9
uses: actions/setup-python@v5
with:
python-version: 3.9.19
# - name: Install dependencies
# run: |
# # $CONDA is an environment variable pointing to the root of the miniconda directory
Expand All @@ -32,16 +32,13 @@ jobs:
# $CONDA/bin/conda info --base
# $CONDA/bin/conda info --envs
# #CONDA_PREFIX=/usr/share/miniconda/envs/testenv

- name: Initiate conda channels
uses: conda-incubator/setup-miniconda@v3
with:
channels: conda-forge,bioconda,default
# activate-environment: testenv
auto-activate-base: true


- name: Set up environment
- name: Set up QIIME Conda environment
run: |
ls
pwd
Expand All @@ -55,7 +52,6 @@ jobs:
pip install pyzstd
pip install pytest
pip install .
- name: Test with pytest
run: |
conda activate activate testenv
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