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edited SQL to output fasta files into fasta dir #36

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edited SQL to output fasta files into fasta dir #36

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4 changes: 2 additions & 2 deletions Model/lib/wdk/model/questions/params/similarityParams.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -148,7 +148,7 @@ order by parentterm,term
case when ot.organism is null
then files.parentterm else ot.parentterm end as parentterm,
case when (ot.organism is null or ( ot.organism is not null and ot.term = files.term))
then '@WEBSERVICEMIRROR@' || '/' || ot.project_id || '/build-%%buildNumber%%/' || files.abbreviation || '/motif/GenomeDoubleStrand.fasta'
then '@WEBSERVICEMIRROR@' || '/' || ot.project_id || '/build-%%buildNumber%%/' || files.abbreviation || '/fasta/GenomeDoubleStrand.fasta'
else '-1'
end as internal
from apidbtuning.organismtree ot,
Expand Down Expand Up @@ -201,7 +201,7 @@ with orgs as (
select distinct nvl(ot.term, files.term) as term,
case when ot.organism is null then files.parentterm else ot.parentterm end as parentterm,
case when (ot.organism is null or ( ot.organism is not null and ot.term = files.term))
then '@WEBSERVICEMIRROR@' || '/' || files.project_id || '/build-%%buildNumber%%/' || files.abbreviation || '/motif/AnnotatedProteins.fasta'
then '@WEBSERVICEMIRROR@' || '/' || files.project_id || '/build-%%buildNumber%%/' || files.abbreviation || '/fasta/AnnotatedProteins.fasta'
else '-1'
end as internal
from apidbtuning.organismtree ot,
Expand Down