run tests #3
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| name: ci-notebooks | |
| on: | |
| pull_request: | |
| paths: | |
| - modin/** | |
| - examples/tutorial/** | |
| - .github/workflows/ci-notebooks.yml | |
| - setup.cfg | |
| - setup.py | |
| - requirements/env_hdk.yml | |
| - requirements/env_unidist_linux.yml | |
| concurrency: | |
| # Cancel other jobs in the same branch. We don't care whether CI passes | |
| # on old commits. | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }} | |
| env: | |
| MODIN_GITHUB_CI: true | |
| jobs: | |
| test-tutorial-notebooks: | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| name: test tutorial notebooks | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| execution: [pandas_on_ray, pandas_on_dask, pandas_on_unidist, hdk_on_native] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: ./.github/actions/python-only | |
| if: matrix.execution != 'hdk_on_native' && matrix.execution != 'pandas_on_unidist' | |
| - uses: ./.github/actions/mamba-env | |
| with: | |
| environment-file: requirements/env_hdk.yml | |
| activate-environment: modin_on_hdk | |
| if: matrix.execution == 'hdk_on_native' | |
| - uses: ./.github/actions/mamba-env | |
| with: | |
| environment-file: requirements/env_unidist_linux.yml | |
| activate-environment: modin_on_unidist | |
| if: matrix.execution == 'pandas_on_unidist' | |
| - name: Cache datasets | |
| uses: actions/cache@v2 | |
| with: | |
| path: taxi.csv | |
| # update cache only if notebooks require it to be changed | |
| key: taxi-csv-dataset-${{ hashFiles('examples/tutorial/jupyter/**') }} | |
| # replace modin with . in the tutorial requirements file for `pandas_on_ray` and | |
| # `pandas_on_dask` since we need Modin built from sources | |
| - run: sed -i 's/modin/./g' examples/tutorial/jupyter/execution/${{ matrix.execution }}/requirements.txt | |
| if: matrix.execution != 'hdk_on_native' && matrix.execution != 'pandas_on_unidist' | |
| # install dependencies required for notebooks execution for `pandas_on_ray` and `pandas_on_dask` | |
| # Override modin-spreadsheet install for now | |
| - run: | | |
| pip install -r examples/tutorial/jupyter/execution/${{ matrix.execution }}/requirements.txt | |
| pip install git+https://github.com/modin-project/modin-spreadsheet.git@49ffd89f683f54c311867d602c55443fb11bf2a5 | |
| if: matrix.execution != 'hdk_on_native' && matrix.execution != 'pandas_on_unidist' | |
| # Build Modin from sources for `hdk_on_native` and `pandas_on_unidist` | |
| - run: pip install -e . | |
| if: matrix.execution == 'hdk_on_native' || matrix.execution == 'pandas_on_unidist' | |
| # install test dependencies | |
| # NOTE: If you are changing the set of packages installed here, make sure that | |
| # the dev requirements match them. | |
| - run: pip install pytest pytest-cov black flake8 flake8-print flake8-no-implicit-concat | |
| if: matrix.execution != 'hdk_on_native' && matrix.execution != 'pandas_on_unidist' | |
| - run: pip install flake8-print jupyter nbformat nbconvert | |
| if: matrix.execution == 'hdk_on_native' || matrix.execution == 'pandas_on_unidist' | |
| - run: pip list | |
| if: matrix.execution != 'hdk_on_native' && matrix.execution != 'pandas_on_unidist' | |
| - run: | | |
| conda info | |
| conda list | |
| if: matrix.execution == 'hdk_on_native' || matrix.execution == 'pandas_on_unidist' | |
| # setup kernel configuration for `pandas_on_unidist` execution with mpi backend | |
| - run: python examples/tutorial/jupyter/execution/${{ matrix.execution }}/setup_kernel.py | |
| if: matrix.execution == 'pandas_on_unidist' | |
| - run: jupyter kernelspec list | |
| - run: | | |
| black --check --diff examples/tutorial/jupyter/execution/${{ matrix.execution }}/test/test_notebooks.py | |
| black --check --diff examples/tutorial/jupyter/execution/test/utils.py | |
| - run: | | |
| flake8 --enable=T examples/tutorial/jupyter/execution/${{ matrix.execution }}/test/test_notebooks.py | |
| flake8 --enable=T examples/tutorial/jupyter/execution/test/utils.py | |
| - run: python -m pytest examples/tutorial/jupyter/execution/${{ matrix.execution }}/test/test_notebooks.py |