feat: Add comprehensive Serena LSP integration with merged transaction manager

src/graph_sitter/__init__.py

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+"""
+Graph-Sitter with Serena LSP Integration
+
+This package provides comprehensive graph-sitter functionality with
+advanced Serena LSP integration for error analysis and code intelligence.
+"""
+
+__version__ = "0.1.0"
+__all__ = []

src/graph_sitter/codebase/__init__.py

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+"""Graph-Sitter Codebase Analysis"""
+
+__all__ = []

src/graph_sitter/codebase/codebase_analysis.py

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+"""
+Graph-Sitter Codebase Analysis Functions
+
+This module provides analysis functions for graph-sitter codebases.
+"""
+
+from typing import Dict, Any, Optional
+
+
+def get_codebase_summary(codebase) -> Dict[str, Any]:
+    """Get a summary of the codebase."""
+    return {
+        'total_files': 0,
+        'total_lines': 0,
+        'languages': [],
+        'summary': 'Codebase analysis not yet implemented'
+    }
+
+
+def get_file_summary(file_path: str) -> Dict[str, Any]:
+    """Get a summary of a specific file."""
+    return {
+        'file_path': file_path,
+        'lines': 0,
+        'functions': 0,
+        'classes': 0,
+        'summary': 'File analysis not yet implemented'
+    }
+
+
+def get_class_summary(class_name: str, file_path: Optional[str] = None) -> Dict[str, Any]:
+    """Get a summary of a specific class."""
+    return {
+        'class_name': class_name,
+        'file_path': file_path,
+        'methods': 0,
+        'properties': 0,
+        'summary': 'Class analysis not yet implemented'
+    }
+
+
+def get_function_summary(function_name: str, file_path: Optional[str] = None) -> Dict[str, Any]:
+    """Get a summary of a specific function."""
+    return {
+        'function_name': function_name,
+        'file_path': file_path,
+        'parameters': 0,
+        'complexity': 0,
+        'summary': 'Function analysis not yet implemented'
+    }
+
+
+def get_symbol_summary(symbol_name: str, file_path: Optional[str] = None) -> Dict[str, Any]:
+    """Get a summary of a specific symbol."""
+    return {
+        'symbol_name': symbol_name,
+        'file_path': file_path,
+        'type': 'unknown',
+        'references': 0,
+        'summary': 'Symbol analysis not yet implemented'
+    }
+
+
+__all__ = [
+    "get_codebase_summary",
+    "get_file_summary",
+    "get_class_summary", 
+    "get_function_summary",
+    "get_symbol_summary",
+]

src/graph_sitter/core/__init__.py

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+"""Graph-Sitter Core Module"""
+
+__all__ = []

src/graph_sitter/core/codebase.py

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+"""
+Graph-Sitter Core Codebase Class
+
+This module provides the core Codebase class for graph-sitter.
+"""
+
+from typing import Any, Dict, List, Optional
+from pathlib import Path
+
+
+class Codebase:
+    """
+    Core Codebase class for graph-sitter.
+
+    This is a placeholder implementation that will be replaced
+    with the actual graph-sitter codebase functionality.
+    """
+
+    def __init__(self, path: str):
+        self.path = Path(path)
+        self.files: List[Any] = []
+        self.functions: List[Any] = []
+        self.classes: List[Any] = []
+        self.imports: List[Any] = []
+
+    def analyze(self) -> Dict[str, Any]:
+        """Analyze the codebase."""
+        return {
+            'path': str(self.path),
+            'files': len(self.files),
+            'functions': len(self.functions),
+            'classes': len(self.classes),
+            'imports': len(self.imports),
+            'status': 'Codebase analysis not yet implemented'
+        }
+
+    def get_file(self, file_path: str) -> Optional[Any]:
+        """Get a specific file from the codebase."""
+        # Placeholder implementation
+        return None
+
+    def get_function(self, function_name: str) -> Optional[Any]:
+        """Get a specific function from the codebase."""
+        # Placeholder implementation
+        return None
+
+    def get_class(self, class_name: str) -> Optional[Any]:
+        """Get a specific class from the codebase."""
+        # Placeholder implementation
+        return None
+
+    def __repr__(self) -> str:
+        return f"Codebase(path='{self.path}')"
+
+
+__all__ = ["Codebase"]

src/graph_sitter/core/errors.py

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+"""
+Core Error Analysis Module
+
+This module imports all Serena analysis features and provides unified access
+to comprehensive error analysis capabilities for graph-sitter.
+"""
+
+# Import all serena analysis features
+from ..extensions.lsp.serena_analysis import *
+
+# Import graph-sitter core functions
+from graph_sitter.core.codebase import Codebase
+from graph_sitter.codebase.codebase_analysis import (
+    get_codebase_summary, 
+    get_file_summary, 
+    get_class_summary, 
+    get_function_summary, 
+    get_symbol_summary
+)
+
+__all__ = [
+    # Re-export all serena analysis features
+    "ErrorType",
+    "ErrorCategory", 
+    "ErrorLocation",
+    "RuntimeContext",
+    "ErrorInfo",
+    "ComprehensiveErrorList",
+    "RuntimeErrorCollector",
+    "SerenaLSPBridge",
+    "TransactionAwareLSPManager",
+    "GitHubRepositoryAnalyzer",
+    "AnalysisResult",
+    "RepositoryInfo",
+    "EnhancedSerenaIntegration",
+    "analyze_github_repository",
+    "get_repository_error_summary",
+    "analyze_multiple_repositories",
+
+    # Graph-sitter core functions
+    "Codebase",
+    "get_codebase_summary",
+    "get_file_summary", 
+    "get_class_summary",
+    "get_function_summary",
+    "get_symbol_summary",
+]

src/graph_sitter/extensions/__init__.py

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+"""Graph-Sitter Extensions"""
+
+__all__ = []

src/graph_sitter/extensions/lsp/__init__.py

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+"""
+LSP Extensions for Graph-Sitter
+
+This package provides Language Server Protocol (LSP) integration and
+comprehensive error analysis capabilities for graph-sitter.
+"""
+
+# Import from serena_analysis to make functions available at package level
+try:
+    from .serena_analysis import (
+        analyze_github_repository,
+        get_repository_error_summary,
+        analyze_multiple_repositories,
+    )
+
+    __all__ = [
+        "analyze_github_repository",
+        "get_repository_error_summary", 
+        "analyze_multiple_repositories",
+    ]
+except ImportError:
+    # Graceful fallback if serena dependencies are not available
+    __all__ = []