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1. BacBench BacBench Public

   Forked from macwiatrak/BacBench

   Multi-scale and multi-task benchmark for evaluating ML models for bacterial genomics across the bacterial tree of life.

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2. AMR_Finder_Plus AMR_Finder_Plus Public

   Use AMR Finder Plus on a large number of MAGs and collate information per protein

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3. BacHGT BacHGT Public

   Embed whole bacterial genomes in Bacformer and use the representation to understand population structure and evolution of both the core and accessory genome

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4. Bacformer Bacformer Public

   Forked from macwiatrak/Bacformer

   Modeling whole bacterial genome as a sequence of proteins.

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5. BacMGEfinder BacMGEfinder Public

   Mobile Genetic Elements in Klebsiella, identification and isolation

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6. pangenome_merge pangenome_merge Public

   Forked from bacpop/pangenomerge

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