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65 Open 172 Closed
65 Open 172 Closed
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Issues list

Isoquant Test fails via conda version
#295 opened Mar 15, 2025 by alvizain786
1
CRITICAL - IsoQuant failed with the following error
#294 opened Mar 12, 2025 by donghyeon321
5
IsoQuant does not seem to generate results.transcript_models.gtf when run on one sample
#293 opened Mar 5, 2025 by jdcla
1
No known transcripts are quantified for a known gene from a model organism
#292 opened Mar 5, 2025 by alvizain786
1
Uniquely assigned reads seem non-unique algorithm Issue requires algorithmic improvement input data Issue is caused by input data
#291 opened Feb 21, 2025 by airichli
2
Inconsistency among *read_assignments.tsv, *.transcript_counts.tsv, and *.gene_counts.tsv question Further information is requested
#290 opened Feb 19, 2025 by airichli
3
Count Output
#289 opened Feb 18, 2025 by Haisuccess93
2
Multiple samples and single samples produce some transcripts of GTF somewhat differently
#287 opened Feb 17, 2025 by Tang-pro
7
Failed to visualization
#286 opened Feb 15, 2025 by Seongmin-Jang-1165
1
database disk image is malformed
#285 opened Feb 14, 2025 by dawangran
1
IsoQuant fails on index construction for large genomes enhancement New feature or request input data Issue is caused by input data
#284 opened Feb 13, 2025 by petersbrC
2
Terminal exons with exclude_counts? algorithm Issue requires algorithmic improvement enhancement New feature or request
#283 opened Feb 12, 2025 by qsonehara
4
No start_codon and stop_codon in GTF file question Further information is requested
#282 opened Feb 6, 2025 by Tang-pro
3
Redundant isoforms algorithm Issue requires algorithmic improvement enhancement New feature or request question Further information is requested
#281 opened Feb 2, 2025 by KMbio43
4
Scaling Isoquant performance Issues related to computational perfromance
#280 opened Jan 24, 2025 by omarelgarwany
3
Process terminated while processing chromosomes
#279 opened Jan 24, 2025 by kwglam
3
Error when running IsoQuant with customized gtf file. input data Issue is caused by input data
#274 opened Jan 7, 2025 by SuiYue-2308
3
"__no_feature " read in SAMPLE_ID.transcript_counts.tsv file question Further information is requested
#272 opened Dec 31, 2024 by SweetGojoSatoru
1
How IsoQuant label novel isoform discovery in the OUT.transcript_models.gtf question Further information is requested
#271 opened Dec 24, 2024 by yuntianf
1
Suggestion for Adjusting Scoring Logic in long_read_assigner.py (extra_left and extra_right) algorithm Issue requires algorithmic improvement bug Something isn't working enhancement New feature or request fixed in release Issue resolved and the fix is released, waiting for approval
#270 opened Dec 21, 2024 by biosalt-cc
4
How IsoQuant works when multiple samples are given as input? question Further information is requested
#269 opened Dec 17, 2024 by dslv3y
5
Using Isoquant for single-cell data and de-duplications enhancement New feature or request
#268 opened Dec 13, 2024 by Kyung-TaeLee
1
Hi, just have a quick question, Is it possible to use isoQuant to discover and quantify fusion RNAs? Thanks! enhancement New feature or request question Further information is requested
#267 opened Dec 11, 2024 by yinyuanmtu
6
ModuleNotFoundError: No module named 'pysam' installation Problem with package installation third-party problem Problem is related to other tools, libraries, system etc
#266 opened Dec 9, 2024 by maronem
1
Structural categories not coordinated with isoform IDs weird results Something looks odd in the resulting files
#265 opened Dec 6, 2024 by evayfang2019
4
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