Version 1.2

Originally released July 3, 2013.

• Include node priors when calculating path weight
• Generate Cytoscape v2.8 files to visualize high-confidence pathways
• Predict single and double knockdown effects
• Fix bug in TF activity priors update discovered by Siddhartha Jain
• Fix bug in node score calculation for vertices whose names contain underscores discovered by Siddhartha Jain
• Remove species-specific test code

Version 1.1

Originally released December 28, 2012.

• Can use StorePaths.jar to precompute and store paths in the network
• Parallelized parts of SDREM to leverage machines with multiple processors
• Support enumeration and analysis of only the highest weight paths
• Store all satisfied paths at each iteration
• Consolidate all licenses into license.txt

Version 1.0

Baseline code release. Originally released March 21, 2011.