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@pradyumnae pradyumnae commented Jan 9, 2026

Summary

Adds a segmentation container and GitHub Actions workflow to build and publish it to GHCR.

What’s included

  • segmentation/ directory with Dockerfile and reference notebook
  • New workflow: .github/workflows/publish-segmentation-image.yaml
  • Image published as: ghcr.io/als-computing/microct-segmentation

Notes

  • Model weights are not included in the repo or image
  • Weights should be provided via NERSC filesystem and WEIGHTS_PATH

@dabramov @taxe10 @Wiebke
PR is ready for review — thank you!

@davramov davramov self-requested a review January 13, 2026 00:03
@davramov
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I am building the image on Perlmutter now, and may have more notes after that is complete.

Can you please add a README.md to the segmentation/ folder that walks through building and running this locally as well as on NERSC?

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2 participants