Releases: amnh/PhyG
Phylogenetic Graph (PhyG) v1.0
Version 1.0 release of PhyG with many improvements and feature enhancements since the last beta release.
Phylogenetic Graph (PhyG) v0.1.4
Changes in v 0.1.4
-- Enhancements
Added missing Threshold to control levels of missing data in terminal taxa
Changes to parallel execution
Improved initial graph building for data sets with large amounts of missing data
--Bug fixed
Compile date in splash
Upper/lower case in wide and large sequence data
v.0.1.3
Changes in v 0.1.3
-- Enhancements
Improved TNT output with TNT legible trees
Added graph evaluation procedures (Static Approximation, Single Traversal) to randomized search
Implemented Static Approximation for networks
Parallelized output of Implied Alignment fasta/c and TNT
Improved behavior of distance and character builds with missing data
-- Bugs Fixed
Transform for non 1:1 nucleotide sequences caused seg fault
Simulated annealing and drift parameter errors for networks
v0.1.2
v0.1.2 Beta release
- Fixes issue with empty graph throwing an error in Text output
- Changed behavior of "search'
a) if there are no exiting graphs, distance-based graphs are first created
b) drift and annealing only operate on current best graphs
PhyGraphUserManual.pdf
Tutorials.tar.gz
Full Changelog: V0.1.2...v0.1.2
v0.1.1
v0.1.1 Beta release
PhyGraphUserManual.pdf
Tutorials.tar.gz