A repository for scripts from Majewski's lab in our contribution to NSD2i paper
In each of our scripts we provide commented code to produce our figures in the paper. The folder references/ contains files that we used in some of our analyses, such as:
- MS_gozani.yaml: MS coefficients used to normalize the bigWig files
- hg38.igr_20kb.bed: bed file with intergenic regions used for creating deepTools plots
- hg38.protein.coding.genes.bed: bed file with genic regions used for creating deepTools plots
The folder scripts/ provides some accesory scripts that are called from the main ones producing the images.
The run.sh file specifies how to call each of the scripts to produce the images