Add missing JMX metrics for ContainerInsights. (#898)

### Description of changes
* Added missing metrics from the ContainerInsights
[dashboard](https://docs.aws.amazon.com/AmazonCloudWatch/latest/monitoring/ContainerInsights-Prometheus-metrics.html#ContainerInsights-Prometheus-metrics-jmx)
not included in the
[agent](https://github.com/aws-observability/aws-otel-java-instrumentation/blob/c39b76830931899a678f72d502dafe33329adde5/instrumentation/jmx-metrics/src/main/resources/jmx/rules/jvm.yaml)'s
solution for JMX.
* Compared the current spec files for JVM and Tomcat with the dashboard
to see what was missing.
* Set up an EC2 cluster, a Tomcat application, and JMXTerm to find the
bean and metric names for the missing metrics.
* Added these to the spec file based on appropriate types and the naming
convention from
[OTel](https://github.com/open-telemetry/opentelemetry-java-instrumentation/blob/main/instrumentation/jmx-metrics/javaagent/README.md).
* Then, the ADOT Jar image was built and tested with the
`amazon-cloudwatch-agent-operator` and `helm-charts` on an EKS cluster
with a custom Tomcat deployment, which correctly produced the correct
metrics:
    * `./scripts/local_patch.sh && ./gradlew build`
* `docker build --platform linux/amd64 -t adot-autoinstrumentation-java
.`
    * `[add docker image to ECR]`

### Manual testing
For testing, I decided to use this built image with the CloudWatch Agent
to see if these metrics are able to be emitted and tracked on the CW
console.

#### Configuration
```
    {
      "metrics": {
        "namespace": "tomcat",
        "metrics_collected": {
          "jmx": {
            "jvm": {
              "measurement": [
                "jvm.system.swap.space.total",
                "jvm.system.swap.space.free",
                "jvm.system.physical.memory.total",
                "jvm.system.physical.memory.free",
                "jvm.system.available.processors",
                "jvm.system.cpu.utilization",
                "jvm.open_file_descriptor.count",
                "jvm.daemon_threads.count",
                "jvm.threads.count"
              ]
            },
            "tomcat": {
              "measurement": [
                "tomcat.rejected_sessions",
                "tomcat.sessions"
              ]
            }
          }
        }
      }
    }
```

#### CW Console
<img width="949" alt="Screenshot 2024-10-04 at 11 08 51 AM"
src="https://github.com/user-attachments/assets/e9f3869b-f17d-4d17-81b5-0c0b97272012">

By submitting this pull request, I confirm that my contribution is made
under the terms of the Apache 2.0 license.

---------

Co-authored-by: Mengyi Zhou (bjrara) <[email protected]>

instrumentation/jmx-metrics/src/main/resources/README.md

@@ -10,4 +10,7 @@ OTEL_EXPERIMENTAL_METRICS_VIEW_CONFIG: classpath:/jmx/view.yaml
 
 ### rules/*.yaml
 The rules are a translation of the JMX Metric Gatherer's [target systems](https://github.com/open-telemetry/opentelemetry-java-contrib/tree/main/jmx-metrics/src/main/resources/target-systems)
-based on the [JMX metric rule YAML schema](https://github.com/open-telemetry/opentelemetry-java-instrumentation/blob/main/instrumentation/jmx-metrics/javaagent/README.md#basic-syntax).
+based on the [JMX metric rule YAML schema](https://github.com/open-telemetry/opentelemetry-java-instrumentation/blob/main/instrumentation/jmx-metrics/javaagent/README.md#basic-syntax).
+
+### SystemCpuLoad
+The `SystemCpuLoad` metric is deprecated and Java versions 14+ now use `CpuLoad`. However, to avoid emitting double metrics, we stick to using `SystemCpuLoad` as it still works on newer versions.

instrumentation/jmx-metrics/src/main/resources/jmx/rules/jvm.yaml

@@ -75,21 +75,50 @@ rules:
         desc: The maximum amount of memory can be used for the memory pool
   - bean: java.lang:type=Threading
     unit: "1"
-    prefix: jvm.threads.
     type: gauge
     mapping:
       ThreadCount:
-        metric: count
+        metric: jvm.threads.count
         desc: Number of threads
+      DaemonThreadCount:
+        metric: jvm.daemon_threads.count
+        desc: Number of daemon threads
   - bean: java.lang:type=OperatingSystem
-    prefix: jvm.cpu.
     type: gauge
     mapping:
+      TotalSwapSpaceSize:
+        metric: jvm.system.swap.space.total
+        desc: The host swap memory size in bytes
+        unit: by
+      FreeSwapSpaceSize:
+        metric: jvm.system.swap.space.free
+        desc: The amount of available swap memory in bytes
+        unit: by
+      TotalPhysicalMemorySize:
+        metric: jvm.system.physical.memory.total
+        desc: The total physical memory size in host
+        unit: by
+      FreePhysicalMemorySize:
+        metric: jvm.system.physical.memory.free
+        desc: The amount of free physical memory in host
+        unit: by
+      AvailableProcessors:
+        metric: jvm.system.available.processors
+        desc: The number of available processors
+        unit: "1"
+      SystemCpuLoad:
+        metric: jvm.system.cpu.utilization
+        desc: The current load of CPU in host
+        unit: "1"
       ProcessCpuTime:
-        metric: time
+        metric: jvm.cpu.time
         unit: ns
         desc: CPU time used
       ProcessCpuLoad:
-        metric: recent_utilization
+        metric: jvm.cpu.recent_utilization
         unit: "1"
         desc: Recent CPU utilization for the process
+      OpenFileDescriptorCount:
+        metric: jvm.open_file_descriptor.count
+        desc: The number of opened file descriptors
+        unit: "1"

instrumentation/jmx-metrics/src/main/resources/jmx/rules/tomcat.yaml

@@ -3,12 +3,15 @@ rules:
   - bean: Catalina:type=Manager,host=localhost,context=*
     metricAttribute:
       context: param(context)
+    unit: sessions
+    type: gauge
     mapping:
       activeSessions:
         metric: tomcat.sessions
-        type: gauge
-        unit: sessions
         desc: The number of active sessions.
+      rejectedSessions:
+        metric: tomcat.rejected_sessions
+        desc: The number of rejected sessions.
   - bean: Catalina:type=GlobalRequestProcessor,name=*
     metricAttribute:
       name: param(name)
@@ -68,12 +71,15 @@ rules:
   - bean: Tomcat:type=Manager,host=localhost,context=*
     metricAttribute:
       context: param(context)
+    unit: sessions
+    type: gauge
     mapping:
       activeSessions:
         metric: tomcat.sessions
-        type: gauge
-        unit: sessions
         desc: The number of active sessions.
+      rejectedSessions:
+        metric: tomcat.rejected_sessions
+        desc: The number of rejected sessions.
   - bean: Tomcat:type=GlobalRequestProcessor,name=*
     metricAttribute:
       name: param(name)