Merge pull request #3 from bcgsc/feat/update-readme #25
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: quick-tests | |
| on: | |
| - push | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 4 | |
| matrix: | |
| python-version: ['3.9', '3.10', '3.11', '3.12'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools | |
| pip install -e .[test] # coverage reports need -e to capture properly | |
| - name: Lint with flake8 | |
| run: | | |
| pip install flake8 | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 pori_python --count --select=E9,F63,F7,F82 --show-source --statistics | |
| - name: Check with black | |
| run: | | |
| pip install black | |
| black --check -S -l 100 pori_python tests | |
| - name: Short Tests with pytest | |
| run: pytest --junitxml=junit/test-results-${{ matrix.python-version }}.xml --cov ipr --cov-report term --cov-report xml | |
| env: | |
| IPR_USER: ${{ secrets.IPR_TEST_USER }} | |
| IPR_PASS: ${{ secrets.IPR_TEST_PASSWORD }} | |
| GRAPHKB_USER: ${{ secrets.GKB_TEST_USER }} | |
| GRAPHKB_PASS: ${{ secrets.GKB_TEST_PASS }} | |
| EXCLUDE_INTEGRATION_TESTS: 1 | |
| # EXCLUDE_INTEGRATION_TESTS: ${{ matrix.python-version != '3.11' }} |