SDEV-4431 - python3.9 types compatibility - use from __future__ impor…

…t annotations for typing.

pori_python/graphkb/genes.py

@@ -1,5 +1,7 @@
 """Methods for retrieving gene annotation lists from GraphKB."""
 
+from __future__ import annotations
+
 from typing import Any, Dict, List, Sequence, Set, Tuple, cast
 
 from pori_python.types import IprGene, Ontology, Record, Statement, Variant

pori_python/ipr/annotate.py

@@ -2,6 +2,8 @@
 handles annotating variants with annotation information from graphkb
 """
 
+from __future__ import annotations
+
 from requests.exceptions import HTTPError
 
 from pandas import isnull

pori_python/ipr/inputs.py

@@ -2,6 +2,8 @@
 Read/Validate the variant input files
 """
 
+from __future__ import annotations
+
 import json
 import jsonschema
 import os

pori_python/ipr/ipr.py

@@ -3,6 +3,8 @@
 by other reporting systems
 """
 
+from __future__ import annotations
+
 from typing import Dict, Iterable, List, Sequence, Set, Tuple, cast
 
 from pori_python.graphkb import GraphKBConnection

pori_python/ipr/main.py

@@ -1,3 +1,5 @@
+from __future__ import annotations
+
 import argparse
 import datetime
 import json

pori_python/ipr/summary.py

@@ -1,3 +1,5 @@
+from __future__ import annotations
+
 import base64
 import json
 from typing import Callable, Dict, List, Sequence, Set, Tuple, cast

pori_python/ipr/therapeutic_options.py

@@ -2,6 +2,8 @@
 upload variant and report information to IPR
 """
 
+from __future__ import annotations
+
 import pandas
 from typing import Any, Dict, List, Sequence