Bugfix/devsu 2477 filter gkb matches

[mathieulemieux]

See https://www.bcgsc.ca/jira/browse/DEVSU-2477

[mathieulemieux]

Here are some before/after filtering counts:

/projects/POG/POG_data_hg38_no_alt/POG1858/gsc_report/gsc_report-13.0.0/genomic/F145899_F145808_F145970/ipr_report.json
before: 144
after: 115
/projects/POG/POG_data_hg38_no_alt/POG1868/gsc_report/gsc_report-13.0.0/genomic/F146248_F145962_F146348/ipr_report.json
before: 597
after: 569
/projects/POG/POG_data_hg38_no_alt/POG1911/gsc_report/gsc_report-13.0.0/genomic/F147930_F147420_F148116/ipr_report.json
before: 222
after: 205

[codecov-commenter]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 86.15%. Comparing base (e4689df) to head (2832eb5).

Additional details and impacted files

@@             Coverage Diff             @@
##           develop      #37      +/-   ##
===========================================
+ Coverage    86.04%   86.15%   +0.10%     
===========================================
  Files           18       18              
  Lines         2179     2196      +17     
===========================================
+ Hits          1875     1892      +17     
  Misses         304      304              

Flag	Coverage Δ
unittests	86.15% <100.00%> (+0.10%)	⬆️

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[mathieulemieux]

I'll post comparisons for wildtypes tomorrow

[mathieulemieux]

/projects/POG/POG_data_hg38_no_alt/POG1868/gsc_report/gsc_report-13.0.0/genomic/F146248_F145962_F146348/ipr_report.json

before:

• 597

after:

• if wildtype are taken into account: 569
• if we do not take them into account when filtering: 577

2 unique statements affected:

• https://graphkb.bcgsc.ca/view/Statement/156:13594
• https://graphkb.bcgsc.ca/view/Statement/154:13687

[mathieulemieux]

When pori_python & ipr_api dev get fixed, I'll be able to generate comparative genomic reports.