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Northeastern University
- Boston, MA, USA
- https://gyorilab.github.io
- @benjamingyori
Highlights
- Pro
Pinned Loading
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indra
indra PublicForked from sorgerlab/indra
Integrated Network and Dynamical Reasoning Assembler
Python 1
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emmaa
emmaa PublicForked from gyorilab/emmaa
Ecosystem of Machine-maintained Models with Automated Analysis
Python
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famplex
famplex PublicForked from sorgerlab/famplex
Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.
Python
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gyorilab/gilda
gyorilab/gilda PublicGrounding of biomedical named entities with contextual disambiguation
1,141 contributions in the last year
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Activity overview
Contribution activity
March 2025
Created 25 commits in 10 repositories
Created a pull request in biopragmatics/bioregistry that received 6 comments
Replace mismatch file with more general mappings table
Background: After #1439 and #1456 it makes sense to systematically review certain mappings and record incorrect ones (currenty in mismatch.json) so…
Opened 8 other pull requests in 4 repositories
biopragmatics/bioregistry
3
merged
1
open
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Adjust OBI banana peel
This contribution was made on Mar 13
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Update mismatches with curated incorrect mappings
This contribution was made on Mar 10
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Improve and finalize mapping checking pipeline for benchmarking
This contribution was made on Mar 10
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Add descriptions for external TogoID entries
This contribution was made on Mar 7
biopragmatics/bioversions
1
open
1
merged
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Reimplement NCIT version getting
This contribution was made on Mar 20
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Update FlyBase getter for new deployment
This contribution was made on Mar 18
gyorilab/gilda
1
merged
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Fix corner case with trailing space in synonym
This contribution was made on Mar 20
EBISPOT/efo
1
open
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Remove trailing spaces and some periods from syonyms
This contribution was made on Mar 16
Reviewed 4 pull requests in 3 repositories
gyorilab/indra_cogex
2 pull requests
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Add kinase over-representation analysis for phosphosites
This contribution was made on Mar 11
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Search UI Enhancement
This contribution was made on Mar 10
biopragmatics/semra
1 pull request
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Automate re-running landscape analysis notebooks
This contribution was made on Mar 20
biopragmatics/bioregistry
1 pull request
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Add descriptions for external TogoID entries
This contribution was made on Mar 7
Opened 3 issues in 3 repositories
biopragmatics/bioversions
1
closed
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Neeed to update flybase version getter
This contribution was made on Mar 18
biopragmatics/semra
1
open
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Handle invalid cross references from Wikidata gracefully
This contribution was made on Mar 14
biopragmatics/bioregistry
1
open
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Add provider for synapse
This contribution was made on Mar 10