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Bioconductor Warnings #159

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merged 19 commits into from
Apr 16, 2024
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9a13be8
fix: error with summarizeSensitivity Profiles on LongTables where it …
jjjermiah Feb 7, 2024
3d54535
add column arguments to drugDoseResponseCurve
jjjermiah Feb 8, 2024
650d0e5
Update cellline parameter in drugDoseResponseCurve function
jjjermiah Feb 21, 2024
ed19577
docs: add documentation for summarizeSensitivityProfiles
jjjermiah Mar 1, 2024
4e38299
fix: Refactor buildComboProfiles function in computeSynergy.R example…
jjjermiah Apr 8, 2024
a7d8565
fix: Add sample_col and treatment_col arguments to drugDoseResponseCu…
jjjermiah Apr 8, 2024
5e17a0c
fix: remove unlinked [boolean] term as it causes warnings
jjjermiah Apr 8, 2024
c197d9d
chore: delete CreatingPharmacoSet.R Remove CreatingPharmacoSet.R vign…
jjjermiah Apr 8, 2024
7361b1e
fix: Update CreatingPharmacoSet.Rmd to install required packages if n…
jjjermiah Apr 8, 2024
f9eb62e
docs: update Vignette to reflect new changes
jjjermiah Apr 8, 2024
048e913
chore: .Rbuildignore and DESCRIPTION Update .Rbuildignore and DESCRIP…
jjjermiah Apr 8, 2024
f5ae5e1
update CreatingPharmacoSet.Rmd Refactor vignette code to install requ…
jjjermiah Apr 8, 2024
c52e6c6
Update version to 3.7.5 in DESCRIPTION file
jjjermiah Apr 12, 2024
b71fff2
docs: update all docs with roxygen.
jjjermiah Apr 12, 2024
032e864
refactor: Refactor code in R/methods-[.R, R/updateObject-methods.R, s…
jjjermiah Apr 12, 2024
592a42e
ci: update R-CMD-check-bioc.yml Update branch filter in R-CMD-check-b…
jjjermiah Apr 12, 2024
9324b7d
Update branch filter in R-CMD-check-bioc.yml workflow
jjjermiah Apr 12, 2024
4a80e0b
Update branch filter in R-CMD-check-bioc.yml workflow
jjjermiah Apr 12, 2024
c4967cc
Merge pull request #158 from bhklab/156-warning-on-bioc
jjjermiah Apr 12, 2024
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fix: Add sample_col and treatment_col arguments to drugDoseResponseCu…
…rve function
jjjermiah committed Apr 8, 2024
commit a7d85652ba8015858909610ee2bdaf55133b8dc3
2 changes: 2 additions & 0 deletions R/drugDoseResponseCurve.R
Original file line number Diff line number Diff line change
@@ -61,6 +61,8 @@
#' @param legend.loc And argument passable to xy.coords for the position to place the legend.
#' @param trunc `logical(1)` Should the viability values be truncated to lie in \[0-100\] before doing the fitting
#' @param verbose `logical(1)` Should warning messages about the data passed in be printed?
#' @param sample_col `character(1)` The name of the column in the profiles assay that contains the sample IDs.
#' @param treatment_col `character(1)` The name of the column in the profiles assay that contains the treatment IDs.
#'
#' @return Plots to the active graphics device and returns an invisible NULL.
#'