HCP Pipelines Improvements (ICAFIX, PostFix, RestingStateStats, TaskfMRIAnalysis, londitudinal/cross-sectional logic)#31

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tjhendrickson wants to merge 82 commits intobids-apps:masterfrom

tjhendrickson:master

Commits on Mar 28, 2018

first commit to github.umn.edu of bids apps hcppipeline app
tjhendrickson
committed

Commits on Mar 29, 2018

made changes to run.py in order to account for my BIDS infrastructure
tjhendrickson
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Commits on Apr 6, 2018

added intendedfor script to run.py to add intendedfor field if it doesn't exist
tjhendrickson
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Commits on Apr 10, 2018

Commits on Apr 13, 2018

Commits on Apr 26, 2018

Commits on Apr 27, 2018

Commits on May 1, 2018

Commits on May 2, 2018

Merge branch 'extend' into master

tjhendrickson
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GitHub Enterprise
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Merge pull request #2 from hendr522/master

tjhendrickson
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GitHub Enterprise
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Finished writing ICAFIX portion of pipeline, can be tested
tjhendrickson
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merged branch extend with master
tjhendrickson
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Commits on May 3, 2018

Commits on May 23, 2018

changed DockerFile for singularity compatiability and updated version
tjhendrickson
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Commits on May 30, 2018

Finished PostFix call within run.py. Execution testing needed. Began RSS portion.
Timothy Hendrickson
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remove SetUpHCPPipeline.sh from run.py
Timothy Hendrickson
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Commits on May 31, 2018

Commits on Jun 1, 2018

made changes to run.py and DockerFile to include RestingStateStats
tjhendrickson
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Delete mri_convert

tjhendrickson
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GitHub Enterprise
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Delete mri_convert.bin

tjhendrickson
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GitHub Enterprise
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Delete sources.sh

tjhendrickson
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GitHub Enterprise
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Delete SetUpHCPPipeline.sh

tjhendrickson
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GitHub Enterprise
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Delete MCR_installer_input.txt

tjhendrickson
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GitHub Enterprise
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changed identation of posData within run.py
tjhendrickson
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Merge branch 'master' of https://github.umn.edu/hendr522/HCPPipelines
tjhendrickson
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made changes to README.md to reflect current capabilities of release
tjhendrickson
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Commits on Jun 2, 2018

Update README.md

tjhendrickson
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GitHub Enterprise
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Update README.md

tjhendrickson
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GitHub Enterprise
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Update run.py

tjhendrickson
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GitHub Enterprise
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Commits on Jun 4, 2018

playing around with R packages to meet FIX dependencies
tjhendrickson
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Commits on Jun 5, 2018

finished testing of ICAFIX, RestingStateStats, and PostFix. Additionally placed files that needed modifying into separate directory named modified_files
tjhendrickson
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Commits on Jun 6, 2018

Commits on Jun 7, 2018

Commits on Jun 11, 2018

created TaskfMRIAnalysis directory within container
Timothy Hendrickson
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incremental progress on TaskfMRI implementation
tjhendrickson
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Commits on Jun 12, 2018

Commits on Jun 14, 2018

place function and resting state underneath for loop
tjhendrickson
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Commits on Jun 15, 2018

making sure odin repo is up to date
tjhendrickson
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Commits on Jun 18, 2018