Issues

• Tracking: run sdrf-skills unattended from Nextflow agent tasks

  bigbio/sdrf-skills#124 · Filter by author jonasscheid opened on Oct 23, 2026

• Package the tools with optional extras and publish techsdrf

  bigbio/sdrf-skills#123 · Filter by author jonasscheid opened on Oct 23, 2026

• reconcile: cleavage_agent_contradicted BLOCKER on a Lys-C + trypsin co-digest when the record says only 'tryptic digestion'

  bigbio/sdrf-skills#114 · Filter by author timosachsenberg opened on Oct 19, 2026

• check: crashes on an OLS read timeout, and reports Cellosaurus-synonym cell lines as hallucinated

  bigbio/sdrf-skills#113 · Filter by author timosachsenberg opened on Oct 17, 2026
  1

• build: no way to express a missing fraction (e.g. pooled gel slices), fractions are always numbered by position

  bigbio/sdrf-skills#112 · Filter by author timosachsenberg opened on Oct 17, 2026
  2

• reconcile: false BLOCKERs from the "treated with" digest cue and from species words outside the MS samples

  bigbio/sdrf-skills#111 · Filter by author timosachsenberg opened on Oct 17, 2026
  2

• structure: duplicate-row-coordinate ignores label channels and rejects dynamic SILAC

  bigbio/sdrf-skills#102 · Filter by author timosachsenberg opened on Oct 7, 2026