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Update seurat-scripts to 4.4.0 #50719

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merged 4 commits into from
Sep 20, 2024
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Update seurat-scripts to 4.4.0 #50719

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cdb1f5a
Update seurat-scripts to 4.4.0
BiocondaBot Sep 15, 2024
46486c3
Updates dependencies as per testing environment
pcm32 Sep 15, 2024
e888c79
Update conda_build_config.yaml
pcm32 Sep 15, 2024
8e9407d
Please linter
pcm32 Sep 15, 2024
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2 changes: 1 addition & 1 deletion recipes/seurat-scripts/conda_build_config.yaml
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Original file line number Diff line number Diff line change
@@ -1,2 +1,2 @@
r_base:
- 4.0
- 4.0.5
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Does it have to be that specific version? Would it break with any newer version, 4.0.6 ?

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This recipe has been a bit sensitive in the past, the format conversions parts have dependencies that easily break. The issue is probably not the r-base version, but the implications its version has on other packages (like the h5 related or loom).

11 changes: 7 additions & 4 deletions recipes/seurat-scripts/meta.yaml
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Original file line number Diff line number Diff line change
@@ -1,16 +1,18 @@
{% set version = "4.0.0" %}
{% set version = "4.4.0" %}

package:
name: seurat-scripts
version: {{ version }}

source:
url: https://github.com/ebi-gene-expression-group/r-seurat-scripts/archive/{{ version }}.tar.gz
sha256: 2ee6f3bf471809efe8455131af763dfa17b84d0134a57cc9d33d7c347898dc29
sha256: 907d30d3c2326565654af170670fc09b6bbda5fbfa356b17486a239ebf022bfb

build:
number: 0
noarch: generic
run_exports:
- {{ pin_subpackage('seurat-scripts', max_pin="x.x") }}

requirements:
host:
Expand All @@ -19,16 +21,17 @@ requirements:
- r-optparse
- libpng
- r-cairo
- r-seurat =4.0.0
- r-uwot <0.1.11
- r-workflowscriptscommon >=0.0.8
- r-seurat <=4.4
- r-loom
- r-svglite
- bioconductor-scater
- r-seuratdisk
- r-remotes
- bioconductor-multtest
- r-metap
- pandoc
- bioconductor-limma
- mscorefonts

test:
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