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bmsacchi/README.md

Howdy! 🤠

My name is Bianca Sacchi, I am a PhD candidate in the Wright lab at U of T EEB.

  • 🌱 My current research focus is Y chromosome degeneration and silencing in plants with very young sex chromosomes
  • 🧬 I love working with non-model genomes, learning new coding and bioinformatics skills, and diving into data (from frustrating data wrangling to genome visualization)
  • 💻 These days I'm working on my remaining thesis projects and learning about industry and government research careers
  • 🤠 When I'm not troubleshooting code or reading papers you can find me bird watching 🦆, rock climbing 🧗‍♀️, or hanging out with my cat Edgar 🐈

PhD projects

Project 1

Y chromosome degeneration in Rumex hastatulus (XYY cytotype), a plant with very young sex chromosomes

  • Extensive rearrangement and ~30% Y gene loss in a <10 MYA sex chromosome
  • Presenting a complete, haplotype-level assembly of a species with two Y chromosomes
  • Collaboration with Zoë Humphries (TE expert)

Project 2

Early regulatory evolution contributes to Y chromosome degeneration in Rumex hastatulus - preprint coming soon

  • Widespread pattern of decreased Y expression relative to X expression (between gametologs)
  • Increased nonsynonymous substitution rate in genes with lower Y expression
  • No evidence of dosage compensation between sexes among X-linked hemizygous and silenced genes

Project 3

Functional gene evolution on the Y chromosomes of Rumex hastatulus - in progress

Pinned Loading

  1. SIWLab/XYYmaleGenome SIWLab/XYYmaleGenome Public

    Scripts and analyses for R. hastatulus XYY male genome paper

    RMarkdown 1 1

  2. genespacev1_rumex genespacev1_rumex Public

    R

  3. GenespaceRumexComparative GenespaceRumexComparative Public

    genespace scripts for many Rumexes

    R

  4. rhastRNAlongreads rhastRNAlongreads Public

    kinnex read processing and analysis

    Python

  5. svCallingXYYgenome svCallingXYYgenome Public

    HTML