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1. harvardinformatics/snpArcher harvardinformatics/snpArcher Public

   Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.

   Python 74 33

2. whole_AL_segmentation whole_AL_segmentation Public

   Various workflows to segment 3D 2-photon microscopy videos of mosquito brains

   Jupyter Notebook

3. intro_ml_eeb_2023 intro_ml_eeb_2023 Public

   Introduction to Machine Learning for EEB

   Jupyter Notebook 1

4. epistasis_reanalysis epistasis_reanalysis Public

   reanalyzing higher-order interactions of publically available data

   Jupyter Notebook

5. STARRseq_code STARRseq_code Public

   Code to call peaks and train deep-learning models on STARRseq data

   Jupyter Notebook

6. raphael-group/hatchet raphael-group/hatchet Public

   HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jointly across multiple tumor samples from the same patient, a…

   Roff 68 32