Skip to content

Add Uchida Lab NWB conversion entry #55

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Draft
bendichter wants to merge 2 commits into
base: main
Choose a base branch
from
Draft

Add Uchida Lab NWB conversion entry #55

Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
533de89
Add Uchida Lab NWB conversion entry
bendichter Jun 9, 2026
8ed9681
Merge branch 'main' into add-uchida-lab-conversion
bendichter Jun 9, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
10 changes: 10 additions & 0 deletions src/content/nwb-conversions/harvard-uchida-lab.md
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,10 @@
---
lab: "Naoshige Uchida"
institution: "Harvard University"
description: "Developing NWB conversion tools for the Uchida lab's behavioral and fiber photometry datasets studying social behavior and observational fear learning. The conversion pipeline handles fiber photometry from Doric hardware (raw and processed MATLAB signals), multi-camera behavioral video (six cameras), DANNCE / social-DANNCE pose estimation, pCampi synchronization data (H5 files with TTL pulses), stimulus and trial event data (e.g., foot shock times), and subject metadata, with Neuropixels electrophysiology (SpikeGLX) including spike-sorted output and trial structure as a stretch goal. The pipeline performs time alignment across data streams and adapts conversions for ingestion into a Spyglass analysis pipeline."
tags: ["fiber photometry", "behavioral tracking", "pose estimation", "video", "electrophysiology"]
github: "https://github.com/catalystneuro/uchida-lab-to-nwb"
date: "2026-04"
funded_project: "SFARI ARC Spyglass"
species: Rat
---
Loading