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Centre for Computational Medicine at SickKids

The Centre for Computational Medicine (CCM) is a Core Facility within the SickKids Research Institute. Email: ccm dot contact at sickkids dot ca
README.md

The Centre for Computational Medicine (CCM)

The Centre for Computational Medicine (CCM) is a Core Facility within The Hospital for Sick Children (SickKids) Research Institute. Our mission is to provide the scientists and clinicians at SickKids with computational expertise, including high performance computing resources, bioinformatics analysis consulting, and software development. The CCM also acts as a collaboration nexus, working with both biological/medical and computational scientists at SickKids and the University of Toronto to identify appropriate collaborators.

Read more about our projects and our team at ccm.sickkids.ca!

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  1. crg2 crg2 Public

    Research pipeline for exploring clinically relevant genomic variants

    Python 15 5

  2. MetaFusion MetaFusion Public

    Python 8 2

  3. stager stager Public

    Share genomic and exomic datasets and request analyses. Deployed for Care4Rare.

    TypeScript 7

  4. osmp osmp Public

    One-Sided Matching Portal

    TypeScript 6 1

  5. slurm-rest-py slurm-rest-py Public

    OpenAPI client package for the Slurm REST API, automatically generated by OpenAPI-generator.

    Python 1 1

  6. status status Public

    📈 Uptime monitor and status page for Centre for Computational Medicine at SickKids, powered by @upptime

    Markdown

Repositories

Showing 10 of 36 repositories
  • status Public

    📈 Uptime monitor and status page for Centre for Computational Medicine at SickKids, powered by @upptime

    ccmbioinfo/status’s past year of commit activity
    Markdown 0 MIT 0 1 0 Updated Apr 22, 2025
  • status-genomics4rd Public

    📈 Uptime monitor and status page for Centre for Computational Medicine at SickKids, powered by @upptime

    ccmbioinfo/status-genomics4rd’s past year of commit activity
    Markdown 0 MIT 0 0 0 Updated Apr 22, 2025
  • ccm_demo Public
    ccmbioinfo/ccm_demo’s past year of commit activity
    Python 2 0 11 (6 issues need help) 0 Updated Apr 21, 2025
  • crg2-pacbio Public
    ccmbioinfo/crg2-pacbio’s past year of commit activity
    Python 0 0 8 2 Updated Apr 17, 2025
  • cre Public

    excel report generation using data from bcbio variant2 germline pipeline

    ccmbioinfo/cre’s past year of commit activity
    Shell 5 MIT 0 0 6 Updated Apr 9, 2025
  • crg2 Public

    Research pipeline for exploring clinically relevant genomic variants

    ccmbioinfo/crg2’s past year of commit activity
    Python 15 Apache-2.0 5 38 4 Updated Apr 7, 2025
  • SR_RNA_junctions_analysis Public
    ccmbioinfo/SR_RNA_junctions_analysis’s past year of commit activity
    R 0 0 0 0 Updated Apr 4, 2025
  • translational-genomics Public
    ccmbioinfo/translational-genomics’s past year of commit activity
    Python 0 0 0 0 Updated Mar 31, 2025
  • FORCAST Public

    Finding, Optimizing, and Reporting Cas Targets: a fully-integrated and open-source pipeline to design CRISPR mutagenesis experiments.

    ccmbioinfo/FORCAST’s past year of commit activity
    Python 4 1 0 0 Updated Mar 21, 2025
  • seqr Public Forked from broadinstitute/seqr

    web-based analysis tool for rare disease genomics. Forked from Broad Institute, hosted for CCM

    ccmbioinfo/seqr’s past year of commit activity
    Perl 0 AGPL-3.0 91 0 1 Updated Mar 17, 2025
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