Skip to content
This repository has been archived by the owner on Sep 30, 2022. It is now read-only.

Issues: centre-for-microbiome-research/GroopM

22 Open 12 Closed
22 Open 12 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

How do i install this?
#39 opened Sep 5, 2022 by jvollme
1
OSError: Not a gzipped file (b'co')
#38 opened Jan 19, 2021 by Huangpq2019
GroopM error
#37 opened Nov 25, 2020 by pbravakos
Has the "recruiting" step been removed from groopm2?
#35 opened Jan 14, 2019 by jvollme
GroopM2 ImportError: No module named tempdir
#34 opened Nov 27, 2018 by kmin940
6
With forked timbalam/GroopM: stream_ext module not found
#32 opened Mar 23, 2018 by transcript
3
Error with PyTables Dependency Still Causing Problems
#30 opened Dec 14, 2017 by Roli-Wilhelm
2
Unexpected error: <type 'exceptions.FloatingPointError'> while running GroopM core
#29 opened Dec 3, 2017 by bastian-wur
1
explicit versions pytables=3.1.1 & numexpr=2.3.1 required as dependencies
#28 opened Jun 22, 2017 by jvollme
please provide release (tag)
#27 opened May 17, 2017 by EricDeveaud
Error using groopm explore
#26 opened Mar 1, 2017 by ghost
Error in creating the db.gm: "Distance matrix 'X' must be symmetric."
#25 opened Jan 16, 2017 by BioAlgs
1
Installation and pytables
#24 opened Aug 9, 2016 by linsalrob
1
groopm parse fails with "Distance matrix 'X' must be symmetric"
#23 opened Jul 6, 2016 by fungs
13
GroopM parse issue: Random alignment retrieval only works for indexed files
#22 opened Jun 23, 2016 by sturne29
2
GroopM Core -stops
#21 opened May 28, 2016 by maria-456
3
Error while using groopm core
#19 opened Jan 26, 2016 by mchaib
5
Error with parsing groopM
#18 opened Dec 3, 2015 by s1081289
4
negative dimensions error in groopm core
#13 opened Aug 16, 2015 by koadman
7
Error in reading in Bam files is groopm parse
#9 opened Feb 10, 2015 by jenmobberley
1
IndexError while building database using groopm parse
#8 opened Jan 8, 2015 by dburkhardt
12
Error upgrading groopM DB
#7 opened Dec 26, 2014 by ctSkennerton
ProTip! no:milestone will show everything without a milestone.