questions about Pandas?

[DylanGuo1101]

(base) C:\Users\Lenovo\scFEA>python src/scFEA.py --data_dir data --input_dir input --test_file Seurat_geneExpr.csv --moduleGene_file module_gene_glutaminolysis1_m23.csv --stoichiometry_matrix cmMat_glutaminolysis1_c17_m23.csv --cName_file cName_glutaminolysis1_c17_m23.csv --output_flux_file output/Seurat_gluta_flux.csv --output_balance_file output/Seurat_gluta_balance.csv
Starting load data...
Load compound name file, the balance output will have compound name.
Load data done.
Starting process data...
Traceback (most recent call last):
File "C:\Users\Lenovo\scFEA\src\scFEA.py", line 370, in
main(args)
File "C:\Users\Lenovo\scFEA\src\scFEA.py", line 172, in main
geneExprDf = geneExprDf.append(temp, ignore_index = True, sort=False)
^^^^^^^^^^^^^^^^^
File "D:\ANACONDA\Lib\site-packages\pandas\core\generic.py", line 6296, in getattr
return object.getattribute(self, name)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
AttributeError: 'DataFrame' object has no attribute 'append'. Did you mean: '_append'?

Is this question about pandas? How to resolve? Thanks a lot!

[borisvdm]

I ran into the same error yesterday, downgrading my pandas to version to 1.2.0 fixed it for me. I manually installed pandas1.2.0 before re-installing scFEA.

Hope this helps

[DylanGuo1101]

I ran into the same error yesterday, downgrading my pandas to version to 1.2.0 fixed it for me. I manually installed pandas1.2.0 before re-installing scFEA.

Hope this helps

Thank you for your help！

[LiuCanidk]

I tried to downgrade the pandas version, but also failed with the same error. Maybe in #53, I tried to change the source code with new attribute of pandas, i.e., pandas.concat. It worked.

[DylanGuo1101]

I tried to downgrade the pandas version, but also failed with the same error. Maybe in #53, I tried to change the source code with new attribute of pandas, i.e., pandas.concat. It worked.

Thank you！I have solved this problem with your help.