Skip to content

Issues: changwn/scFEA

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

41 Open 21 Closed
41 Open 21 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

The 'n_neighbors' parameter of NearestNeighbors
#65 opened Nov 6, 2024 by Zhouchlei
Website down ?
#64 opened Nov 4, 2024 by Krithika-Bhuvan
1
Question about supermodule
#63 opened Oct 16, 2024 by Serine94209792
input type- can't convert np.ndarray of type numpy.object
#62 opened Aug 6, 2024 by shimasadri
Question about the Human_M168_information.symbols.csv
#61 opened Jul 30, 2024 by fujianhan
Lipid metabolism moduleGene_file missing
#60 opened Jul 2, 2024 by iichelhadi
1
Starting train neural network... 100%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 100/100 [01:19<00:00, 1.25it/s] Training time: 79.83818292617798 Traceback (most recent call last): File "src/scFEA.py", line 370, in <module> main(args) File "src/scFEA.py", line 299, in main fluxStatuTest[i, :] = out_m_batch.detach().numpy() TypeError: can't convert cuda:0 device type tensor to numpy. Use Tensor.cpu() to copy the tensor to host memory first.
#59 opened Jun 30, 2024 by seekning
1
PermissionError: [Errno 13] Permission denied: './output/lossValue_20240507-124250.txt'
#56 opened May 8, 2024 by darlingxinli
The practical result differs from the tutorial
#55 opened Apr 20, 2024 by wenhai-cell87
1
Input single cell data type of scFEA analysis
#54 opened Apr 10, 2024 by LiuCanidk
AttributeError: 'DataFrame' object has no attribute 'append'. Did you mean: '_append'?
#53 opened Apr 10, 2024 by ltgmri
2
RuntimeError: value cannot be converted to type uint8_t without overflow: 3416
#52 opened Apr 10, 2024 by pinkrabbit0326
questions about Pandas?
#51 opened Apr 3, 2024 by DylanGuo1101
4
How to biologically interpret negative flux values?
#50 opened Mar 13, 2024 by Joyjoyjoyc
1
Balance values interpretation
#48 opened Jan 30, 2024 by iichelhadi
6
res_dir bug and solution
#47 opened Nov 24, 2023 by FCBMSNLOL
Create STOICHIOMETRY_MATRIX
#45 opened Oct 31, 2023 by paolabc
How to get the over-all flux score in a "Supermodule"
#44 opened Oct 24, 2023 by KarryGoCarry
ValueError: operands could not be broadcast together with shapes
#43 opened Oct 19, 2023 by Dannyxu123
2
-
#42 opened Oct 18, 2023 by ghost
1
scFEA output
#40 opened Jul 11, 2023 by niuruize
8
I cannot output a suitable cell_id file from the seurat object
#39 opened Jun 29, 2023 by pennell01
Is it ok to remove mitochondrial genes in scRNA-seq data if I'm going to use scFEA?
#38 opened Jun 14, 2023 by levinhein
Missing of lipid metabolism network file in download page
#37 opened May 9, 2023 by hiiiyilingzhang
5
How to add other more metabolic pathways?
#36 opened Apr 14, 2023 by AlwaysUp-Lin
3
ProTip! Add no:assignee to see everything that’s not assigned.