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test(server): convert heartbeat suites to shared TRUNCATE CASCADE teardown - #201

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test(server): convert heartbeat suites to shared TRUNCATE CASCADE teardown#201
claudegoogl-sudo wants to merge 235 commits into
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fix/activity-log-teardown-race

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Thinking Path

  • Paperclip is the open source app people use to manage AI agents for work
  • The server test suite includes heartbeat-integration tests that drive real background heartbeat writes (fire-and-forget executeRun, recovery loops). After each test, afterEach tears down the embedded Postgres test database
  • Several of those suites tore down with an ordered per-table db.delete(...) chain. A background heartbeat write that lands between the db.delete(activityLog) step and the db.delete(agents) step re-references an agent row, so delete from agents trips FK activity_log_agent_id_agents_id_fk (Postgres 23503) and fails afterEach. The same ordering race affects every parent/child pair in the chain, not just activity_log -> agents
  • The flake is nondeterministic in the field (the late write only lands inside a ~150 ms teardown window) but the failure signature — delete from "agents" + activity_log_agent_id_agents_id_fk + 23503 — is consistent and identifiable across multiple suites. A single green CI run doesn't prove the absence of the race
  • This pull request moves every affected heartbeat suite onto the existing shared resetEmbeddedPostgresTestDatabase helper (TRUNCATE TABLE companies RESTART IDENTITY CASCADE), which clears the whole per-test dataset atomically and has no parent/child ordering to race
  • The benefit is that the FK-race flake goes away for these suites, and a new test file can no longer hand-roll a wrong delete order — the shared helper is the only path

Linked Issues or Issue Description

Bug-fix path (no public GitHub issue). Underlying problem:

  • What happened: Intermittent afterEach failures in heartbeat suites with background writes. Error: delete from "agents" rejected with SQLSTATE 23503, constraint activity_log_agent_id_agents_id_fk. The failing job's log shows the FK violation landing in afterEach teardown, not in the test body.
  • Expected behavior: afterEach teardown should never trip an FK violation from a write that the test itself did not await.
  • Steps to reproduce: Run a heartbeat suite that drives real background writes (e.g. heartbeat-workspace-finalize-branch.test.ts, heartbeat-responsible-user-invariant.test.ts) in CI many times; eventually the race lands. The new activity-log-fk-race-repro.test.ts in this PR reproduces the failure mode deterministically by forcing the late insert that the broken teardown could not tolerate.
  • Paperclip version/commit: fork master at 8e9ad2918 (and earlier).
  • Deployment mode: CI-only; embedded Postgres test fixture.

What Changed

  • packages/server/src/__tests__/helpers/reset-test-database.ts: extend the shared helper to wrap TRUNCATE TABLE companies RESTART IDENTITY CASCADE in the existing retryOnTransientPgError. TRUNCATE takes an ACCESS EXCLUSIVE lock across every cascaded table, and a concurrent background transaction (e.g. real recovery work spawned by heartbeat-process-recovery.test.ts) can deadlock against it (SQLSTATE 40P01). Postgres picks a victim and rolls back, so retrying is guaranteed to make progress. Reuses services/pg-retry.ts rather than inventing a second retry.
  • heartbeat-workspace-finalize-branch.test.ts, heartbeat-accepted-plan-workspace-refresh.test.ts, heartbeat-dependency-scheduling.test.ts, heartbeat-process-recovery.test.ts, heartbeat-responsible-user-invariant.test.ts, heartbeat-workspace-branch-containment.test.ts: replace the sleep + bounded-drain-loop + ordered-delete teardown with resetEmbeddedPostgresTestDatabase. Each keeps an explicit db.delete(environments) where applicable, since environments is a global table not FK-chained to companies.
  • heartbeat-issue-liveness-escalation.test.ts: this suite already used a raw TRUNCATE TABLE "companies" CASCADE without RESTART IDENTITY and without the helper. Migrate it to the shared helper for consistency, so a future reader has one place to learn the teardown.
  • activity-log-fk-race-repro.test.ts: new deterministic regression guard. Forces the late activityLog insert that the broken teardown could not tolerate, and proves the fixed teardown handles it. Two cases: RED reproduces the original FK violation against an ordered delete chain; GREEN proves TRUNCATE ... CASCADE tolerates the same late insert.

Verification

RED-before / GREEN-after evidence was captured by the new activity-log-fk-race-repro.test.ts:

Test Files  1 passed (1)
     Tests  2 passed (2)
 ✓ activity_log FK teardown race (deterministic repro) > RED: ordered delete chain trips activity_log_agent_id_agents_id_fk on a late insert
 ✓ activity_log FK teardown race (deterministic repro) > GREEN: TRUNCATE ... CASCADE tolerates a late activityLog insert

The RED case reproduces the exact failure signature: delete from "agents" is rejected with SQLSTATE 23503 and constraint activity_log_agent_id_agents_id_fk when a late activityLog insert lands between the activityLog delete and the agents delete. The GREEN case runs the same late insert against resetEmbeddedPostgresTestDatabase and passes — the late insert either commits before the TRUNCATE (cleaned up atomically) or after (its own FK violation is swallowed inside the late-insert promise, not the test's afterEach).

Local test commands (against each affected suite, run individually):

\$ pnpm exec vitest run --no-coverage server/src/__tests__/heartbeat-workspace-finalize-branch.test.ts
\$ pnpm exec vitest run --no-coverage server/src/__tests__/heartbeat-accepted-plan-workspace-refresh.test.ts
\$ pnpm exec vitest run --no-coverage server/src/__tests__/heartbeat-dependency-scheduling.test.ts
\$ pnpm exec vitest run --no-coverage server/src/__tests__/heartbeat-process-recovery.test.ts
\$ pnpm exec vitest run --no-coverage server/src/__tests__/heartbeat-responsible-user-invariant.test.ts
\$ pnpm exec vitest run --no-coverage server/src/__tests__/heartbeat-workspace-branch-containment.test.ts
\$ pnpm exec vitest run --no-coverage server/src/__tests__/heartbeat-issue-liveness-escalation.test.ts
\$ pnpm exec vitest run --no-coverage server/src/__tests__/activity-log-fk-race-repro.test.ts

Result (per file): 3/3, 4/4, 6/6, 75/75, 6/6, 3/3, 17/17, 2/2 — 116/116 PASS.

Also note: while running heartbeat-workspace-finalize-branch.test.ts and heartbeat-process-recovery.test.ts, the WARN log line retrying postgres transaction after transient error {label: 'test_db_reset', attempt: 1, maxAttempts: 6, code: '40P01', delayMs: ...} appeared — i.e. the new deadlock-retry wrapper in resetEmbeddedPostgresTestDatabase engaged exactly as designed when TRUNCATE collided with concurrent background work.

Risks

  • TRUNCATE CASCADE semantics: atomic across all FK-chained tables. The only behavioural change is that test datasets are cleared in one statement instead of an ordered chain; isolated tests already assert their own fixtures per test, so there is no cross-test leakage.
  • Deadlock retry: bounded by services/pg-retry.ts defaults (6 attempts × 25 ms × 2^(n-1) + jitter ≈ 1.6 s worst-case). If a deadlock truly cannot resolve in 6 attempts, the test fails loudly rather than silently — same posture as any other mutation route that uses this helper.
  • Dropped waitForHeartbeatIdle / sleep loops: the converted suites no longer poll for heartbeat idle or sleep 150 ms before teardown. The atomic TRUNCATE removes the ordering race that those waits were papering over. Background writes that land after TRUNCATE either fail their own FK (inside the background promise, swallowed by production code) or land before TRUNCATE (cleaned up atomically). Neither path can fail the test's afterEach.
  • environments table: global, not FK-chained to companies, so each affected suite that touches environments retains an explicit db.delete(environments) after the TRUNCATE. Per-file schema audit confirmed this is the only such hold-back table for these suites.
  • Low risk overall: test-only change, no production code touched.

This is a test-only fix targeting a known CI flake; not core feature work, so no ROADMAP.md overlap.

Model Used

Claude Opus 4.6 (claude-opus-4-6) via Claude Code, extended thinking + tool use.

Checklist

  • I have included a thinking path that traces from project context to this change
  • I have specified the model used (with version and capability details)
  • I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work
  • I have searched GitHub for duplicate or related PRs and linked them above
  • I have either (a) linked existing issues with Fixes: # / Closes # / Refs # OR (b) described the issue in-PR following the relevant issue template
  • I have not referenced internal/instance-local Paperclip issues or links (only public GitHub #NNN / github.com/paperclipai/paperclip URLs)
  • My branch name describes the change (e.g. docs/..., fix/...) and contains no internal Paperclip ticket id or instance-derived details
  • I have run tests locally and they pass
  • I have added or updated tests where applicable
  • I have updated relevant documentation to reflect my changes
  • I have considered and documented any risks above
  • All Paperclip CI gates are green
  • Greptile is 5/5 with no open P2s, recommendations, or follow-ups
  • I will address all Greptile and reviewer comments before requesting merge

claudegoogl-sudo and others added 30 commits May 2, 2026 02:01
* fix(PLA-98): require schema-qualified refs in ctx.db.query

`validatePluginRuntimeQuery` previously only matched `schema.table` patterns
to scope-check, which left unqualified table refs (e.g. `FROM agents`) entirely
unchecked. Plugins with `database.namespace.read` could read every table in
`public` via the connection's default `search_path`, bypassing the
`coreReadTables` whitelist.

Defense in depth:

1. Application layer: new `assertRuntimeQueryRefsQualified` walks the SQL,
   tracks paren scope (subquery vs. function call like `EXTRACT(... FROM x)`),
   and rejects any `FROM`/`JOIN` whose operand is not schema-qualified or a
   sub-`(SELECT|WITH ...)`. Documented as a regex stopgap pending PLA-94 F2.
2. Postgres layer: `pluginDatabaseService.query` and `.execute` now run inside
   a transaction with `SET LOCAL search_path TO <namespace>, pg_temp`, so any
   unqualified ref that escapes the validator resolves inside the plugin's
   schema instead of `public`.

Tests:
- Unit tests for the issue's repro queries (`SELECT * FROM agents`, nested
  `(SELECT count(*) FROM cost_events)`).
- Unit tests proving EXTRACT, subquery, and LATERAL operands still pass.
- Embedded-Postgres integration test asserting the application layer rejects
  the unqualified read before SQL is dispatched.

Docs: plugin authoring guide and SDK README mark the `ctx.db` SQL surface as
alpha and call out the qualified-ref + parameterized-input contracts.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* fix(PLA-99): apply qualified-ref scan to validatePluginRuntimeExecute

PLA-98 wired assertRuntimeQueryRefsQualified into validatePluginRuntimeQuery
but left validatePluginRuntimeExecute relying only on extractQualifiedRefs,
which never inspects subqueries. Writes such as
  UPDATE plugin_test.tbl SET x = (SELECT y FROM agents) WHERE id = $1
  DELETE FROM plugin_test.tbl WHERE id IN (SELECT id FROM cost_events)
passed application-layer validation today; only the PLA-98 search_path
defense at the Postgres layer caught them. The layered-defense story in
PLUGIN_AUTHORING_GUIDE.md and sdk/README.md claims application-layer
rejection for both query and execute - this brings execute in line.

- Parameterize assertRuntimeQueryRefsQualified with a caller label so the
  thrown message is correct for both ctx.db.query and ctx.db.execute.
- Call assertRuntimeQueryRefsQualified(statement, "ctx.db.execute") in
  validatePluginRuntimeExecute after the keyword/banned checks.
- Add unit tests covering the two repro statements (must throw) and a
  happy-path write with a fully-qualified subquery (must pass). Confirmed
  the new rejection tests fail against the pre-fix code.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

---------

Co-authored-by: Paperclip CEO <ceo@paperclip.ing>
Co-authored-by: Paperclip <noreply@paperclip.ing>
…I routes (#5)

Lock in the host's tenancy gate at server/src/routes/plugins.ts:1477
(assertCompanyAccess between companyResolution and worker dispatch).
A future refactor that silently removes the gate would have been invisible
until exploited; these tests fail in that case.

Covers all four companyResolution modes the gate sits behind:

- Agent for company A querying ?companyId=B   (from: "query", GET)
- Agent for company A posting { companyId: B } (from: "body", POST)
- Board user with companyIds=[A] hitting ?companyId=B (from: "query")
- Agent for company A targeting issue from company B (from: "issue")

Each test asserts HTTP 403, the exact authz error message, and that
workerManager.call is never invoked — i.e. the gate runs before any
plugin code. The "issue" mode test also asserts assertCheckoutOwner is
not called, isolating assertCompanyAccess from the layered
enforceScopedApiCheckout "Issue not found" defense.

No production code changes — the gate is verified to exist today.

Verified locally:
- All 12 tests pass against current code (8 prior + 4 new).
- Commenting out assertCompanyAccess in plugins.ts:1477 fails the 4
  new tests with status 200 (board) / 200 (issue) / etc., confirming
  the gate is what they protect.

Co-authored-by: Paperclip CEO <ceo@paperclip.ing>
Co-authored-by: Paperclip <noreply@paperclip.ing>
…n mutations (#7)

* PLA-40: redact secrets in plugin run-log chunks at append() boundary

Apply redactSensitiveText() to event.chunk in RunLogStore.append()
before NDJSON serialization, closing a defence-in-depth gap where a
plugin that accidentally logs a resolved secret (GitHub PAT, OpenAI
key, JWT, Bearer header, etc.) would persist plaintext to
data/run-logs/*.ndjson.

Adds an append()-level integration test that exercises the path
end-to-end: writes a chunk containing a ghp_* token through a
RunLogStore against a tmp RUN_LOG_BASE_PATH, reads back the NDJSON,
and asserts the token is redacted while ts/stream/chunk schema is
preserved (AC #2 + #3). Also adds a non-secret passthrough test.

Mirrors the previously security-reviewed dist/-only patch onto master
source so a rebuild cannot silently revert the protection.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* PLA-141: clear orphan checkoutRunId atomically and tolerate it on mutation

Routine_execution issues stay `in_progress` between runs, so when a routine
heartbeat finishes Paperclip's `releaseIssueExecutionAndPromote` was clearing
only the execution-lock triple. The `checkoutRunId` was left pointing at the
now-terminal `heartbeat_runs` row, which:

  - blocked subsequent mutations (PATCH/comment/release returned 500 because
    the assertCheckoutOwner path expected the run to still be running, and
    board users hit the wedge directly during the 5-minute adoption window),
  - poisoned the `long_active_duration` productivity heuristic into pinging
    "stuck for N hours" on issues that were actually idle.

Three orphan rows were back-filled out of band (PLA-120, PLA-26, PLA-32);
PLA-120 was force-closed.

Changes:

- `releaseIssueExecutionAndPromote` (heartbeat.ts) now clears
  `checkoutRunId`/`executionRunId` independently inside the same write when
  the completing run owns either side, so the two locks can never desync
  again.
- `clearOrphanCheckoutLocksIfTerminal` helper (services/issues.ts) walks each
  lock column, takes a row lock + a stable-ordered run lock, and clears any
  side whose referenced run is terminal (or missing). Returns true if it
  cleared anything; safe to call on every mutation entry point.
- The four mutation routes that were affected (PATCH `/issues/:id`,
  POST `/issues/:id/checkout`, POST `/issues/:id/release`,
  POST `/issues/:id/comments`) call the helper before their existing
  ownership/back-fill paths, so an orphan checkoutRunId is treated as
  unowned rather than as a 500.
- `productivity-review.ts` now skips the `long_active_duration` flag when
  the `checkoutRunId` is terminal AND the latest assignee comment is older
  than the run's `finishedAt` — the common signature of a routine-completion
  orphan that nobody has actually been working on.
- New regression test `issue-orphan-checkout-runid-routes.test.ts`:
  PATCH and addComment from the assignee both succeed when the lock columns
  point at terminal runs, the helper is a no-op when the runs are still
  active, and clears only the terminal side when one lock is live.

Verified:
  pnpm vitest run server/src/__tests__/issue-orphan-checkout-runid-routes.test.ts
    -> 4 passed
  pnpm vitest run server/src/__tests__/issue-stale-execution-lock-routes.test.ts
    -> 3 passed
  pnpm vitest run server/src/__tests__/productivity-review-service.test.ts
                  server/src/__tests__/routine-run-telemetry.test.ts
    -> 12 passed

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* PLA-141: pin productivity-suppression and ownsCheckoutLock cleanup as unit tests

Pre-merge tweaks requested in CTO sign-off (PLA-141 thread). Three small test
changes, no production code changes:

- `productivity-review-service.test.ts`: add the suppression-branch unit test
  for `productivity-review.ts:484-503` — terminal `checkoutRunId` + no later
  assignee comment must drop `long_active_duration` to zero reviews. Add a
  positive control where `checkoutRunId` points at a still-running run so the
  trigger is not suppressed (guards against the terminal-status gate widening
  accidentally to a typo regression).

- `heartbeat-process-recovery.test.ts`: add the `ownsCheckoutLock` post-state
  unit test for `heartbeat.ts:6224-6245` — pre-clear the execution lock so only
  the `checkoutRunId` orphan is in play, then `cancelRun` and assert the row
  ends up with `checkoutRunId = NULL`. Direct coverage of the root-cause fix
  branch.

- `heartbeat-process-recovery.test.ts`: update the existing paused-tree
  recovery assertion (`does not block paused-tree work…`) from
  `checkoutRunId === runId` to `toBeNull()`. The previous expectation was a
  pre-PLA-141 artifact: it asserted the orphan-checkout state we are now
  fixing on every reap. The pause hold is what gates further recovery, not a
  stale checkout lock — confirmed by the rest of that test (no recovery
  issues, no comments, status still `in_progress`).

Verified:
  pnpm vitest run server/src/__tests__/productivity-review-service.test.ts
    -> 13 passed (was 11)
  pnpm vitest run server/src/__tests__/heartbeat-process-recovery.test.ts
    -> 38 passed (was 37, plus the corrected paused-tree assertion)
  pnpm vitest run server/src/__tests__/issue-orphan-checkout-runid-routes.test.ts
                  server/src/__tests__/issue-stale-execution-lock-routes.test.ts
                  server/src/__tests__/routine-run-telemetry.test.ts
    -> 8 passed (no behavioural change)
  pnpm vitest run server/src/__tests__/heartbeat-issue-liveness-escalation.test.ts
                  server/src/__tests__/heartbeat-stale-queue-invalidation.test.ts
                  server/src/__tests__/run-liveness.test.ts
                  server/src/__tests__/issue-liveness.test.ts
    -> 37 passed (adjacent regression check)

Co-Authored-By: Paperclip <noreply@paperclip.ing>

---------

Co-authored-by: Paperclip CEO <ceo@paperclip.ing>
Co-authored-by: Paperclip <noreply@paperclip.ing>
Node's ESM loader keys cached modules by absolute specifier, so
`await import('/.../dist/manifest.js')` returned the original module
for the lifetime of the process even after a rebuild. Every
install/upgrade against the same path silently reused the stale
manifest, freezing tool/route/capability registration and the
DB-side `manifestJson` hydrated from the cached import.

Fix in `plugin-loader.ts`:
- Extract `loadManifestModule()` that resolves a file URL plus
  `?mtime=<mtimeMs>` and dynamically imports that. Unchanged files
  keep the same URL (cached) → no perf regression; changed files get
  a fresh URL → fresh import.
- Route `loadManifestFromPath()` through it so install/upgrade and
  registry persistence both see on-disk contents. `activatePlugin`
  reads `plugin.manifestJson`, which is now refreshed by the install
  / update writes per AC #3.

Roll-in (validator):
- Reject `:` in `tool.name` at install/upgrade time with a clear
  error pointing at the offending name and suggesting the bare-name
  fix. Catches the original `cad:run_script` typo from PLA-58 before
  the cache could be poisoned in the first place.

Tests (`plugin-loader.test.ts`):
- Regression test that writes a manifest, reads it, overwrites with
  a new tool name + bumped mtime, and asserts the second read sees
  the new name. Verified to fail without the cache-bust query
  string and pass with it.
- Cached-when-unchanged test pins identity equality across two reads
  of an unchanged file (no perf regression).
- Validator tests covering the ':' rejection (with offending-name
  pointer) and the bare-name happy path.

Local-dev impact: no host restart required between iterations of a
plugin's `dist/manifest.js` — uninstall + reinstall (or upgrade)
observes the latest build immediately.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
Apply redactSensitiveText() to event.chunk in RunLogStore.append()
before NDJSON serialization, closing a defence-in-depth gap where a
plugin that accidentally logs a resolved secret (GitHub PAT, OpenAI
key, JWT, Bearer header, etc.) would persist plaintext to
data/run-logs/*.ndjson.

Adds an append()-level integration test that exercises the path
end-to-end: writes a chunk containing a ghp_* token through a
RunLogStore against a tmp RUN_LOG_BASE_PATH, reads back the NDJSON,
and asserts the token is redacted while ts/stream/chunk schema is
preserved (AC #2 + #3). Also adds a non-secret passthrough test.

Mirrors the previously security-reviewed dist/-only patch onto master
source so a rebuild cannot silently revert the protection.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
…allowlist

SE review on PR paperclipai#5019 flagged the colon denylist as a deny-over-anything-string —
whitespace, control chars, path separators, and unicode lookalikes remained legal
on `pluginToolDeclarationSchema.name`. Replace it with the same allowlist regex
already used by `pluginEnvironmentDriverDeclarationSchema.driverKey`:

    /^[a-z0-9][a-z0-9._-]*$/

The allowlist subsumes the previous ':' denylist, so the manifest-level
superRefine block at packages/shared/src/validators/plugin.ts:658-669 is
deleted. The `cad:run_script` regression case from PLA-58 still fails
validation (the colon is not in the allowlist), and the field path
("tools", i, "name") is still reported for UI highlighting.

Tests:
- Update the colon-rejection test to assert the allowlist contract
  (shape-focused message + name-targeted path).
- Add a new test that rejects whitespace, uppercase, and path separators
  to lock the broader allowlist behavior in.
- All `packages/shared` validator tests + plugin-loader/run-log-store
  tests pass.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
…idget (#6)

The host only mounts dashboardWidget in v1, but the manifest validator
currently accepts the full PLUGIN_UI_SLOT_TYPES enum. A plugin shipping
type: "sidebar" validates fine, installs, then silently never renders.

Catch at the install boundary by refining ui.slots[].type to the v1
host-rendered subset and emitting a clear error that names the supported
set (e.g. `Invalid slot type "sidebar". v1 supports: dashboardWidget`).

PLUGIN_UI_SLOT_TYPES stays the canonical list of *planned* slot types
for the host registry and future SDK versions; only the manifest schema
narrows. The new const PLUGIN_UI_SLOT_TYPES_V1_SUPPORTED is the seam to
expand as more slot types reach the v1 host-rendered floor.

Adds focused validator tests covering the dashboardWidget happy path and
each non-entity-scoped reserved slot type.

Co-authored-by: Paperclip CEO <ceo@paperclip.ing>
Co-authored-by: Paperclip <noreply@paperclip.ing>
…ch can find the worker

When a plugin's tools are registered through `pluginLoader → toolDispatcher.registerPluginTools → registry.registerPlugin`, the optional `pluginDbId` (the plugin row's DB UUID) was never threaded from the loader to the registry. The registry then defaulted `tool.pluginDbId` to the plugin **key** (e.g. `"platform.cad"`).

`PluginToolRegistry.executeTool` calls `workerManager.isRunning(tool.pluginDbId)` to decide whether to dispatch. The worker manager is keyed by DB UUID, so the lookup with the plugin key returns `false` and every dispatch fails closed with `502 "worker for plugin '<key>' is not running"`, even when the worker is running. PLA-308 hit this on `cad:run_script` and `cad:export`.

The fix is a 3-line plumbing change:

- Extend `PluginToolDispatcher.registerPluginTools` with an optional `pluginDbId?: string` parameter (interface + factory implementation). Backwards-compatible: callers that pass two args still work.
- At the only host call site in `plugin-loader.ts`, pass the DB UUID (`pluginId` in loader scope) as the third argument. `pluginKey` continues to be the namespacing key.

The downstream `PluginToolRegistry.registerPlugin(pluginId, manifest, pluginDbId?)` already accepted and plumbed this argument through `addTool` to `tool.pluginDbId` — this PR just wires it end-to-end.

Adds a focused regression test that registers a plugin via the dispatcher with a synthetic UUID and asserts `tool.pluginDbId` is the UUID (not the key). Confirmed: the new test fails on master and passes with this patch.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
fix(PLA-323): thread pluginDbId through registerPluginTools so dispatch can find the worker
PLA-159/40/163: manifest cache-bust + secret redaction + tool name allowlist
Stamp all 24 workspace package.json files for fork-build-4. Cumulative content:
PLA-159 (manifest cache-bust), PLA-40 (run-log secret redaction), PLA-163
(plugin tool name allowlist), plus PLA-323 from fork-build-3 already on master.

Refs: PLA-348

Co-Authored-By: Paperclip <noreply@paperclip.ing>
Re-pack of fork-build-4 content (PLA-159 / PLA-40 / PLA-163 cumulative
on top of fork master) — fork-build-5 fixes the missing ui-dist/
packaging from fork-build-4 (server prepack: prepare:ui-dist did not run).

Refs PLA-366

Co-Authored-By: Paperclip <noreply@paperclip.ing>
* feat(PLA-376): scaffold release-time manifest validation gate

Mirrors the PLA-376 release-time validation gate from
paperclip-plugin-cad into the create-paperclip-plugin scaffold so every
new plugin inherits the gate by default. Same rationale: plugin-cad
v0.1.1 shipped with `cad:run_script` tool names that the post-PLA-163
host validator rejects, the release passed CI before the operator's
install attempt revealed the manifest was unloadable, and PLA-373 ask
C — "make this not happen again" — applies to all future plugins,
not just plugin-cad.

What scaffolded plugins now get out of the box
- `scripts/validate-manifest.mjs` — loads `dist/manifest.js` via
  `paperclipPlugin.manifest`, runs `pluginManifestV1Schema` from
  `@paperclipai/shared/validators/plugin`, and additionally enforces
  the PLA-163 tool-name allowlist regex (mirrored locally because the
  published shared package lags the fork validator on this rule).
- `tests/validate-manifest.spec.ts` — vitest regression coverage that
  proves the gate catches `bad:name` and accepts the dot/hyphen/
  underscore lowercase forms.
- `.github/workflows/manifest-validate.yml` — PR + push gate that
  builds, runs the regression test, then runs the gate against the
  built manifest.
- `package.json` — `validate:manifest` script and a `prepack` hook
  (`npm run build && npm run validate:manifest`) so `npm pack` /
  `npm publish` cannot succeed with a manifest the host will reject.

Why @paperclipai/shared moves out of the conditional
The gate imports `pluginManifestV1Schema` from
`@paperclipai/shared/validators/plugin`, so every scaffolded plugin
needs the dep — no longer optional. Workspace-internal scaffolds get
`workspace:*`; out-of-workspace scaffolds get the packed-tarball
`file:` dep that the previous code already produced. The `*` fallback
case is unreachable because `packedSharedTarball` is non-null whenever
`useWorkspaceSdk` is false (see initialization above).

Verification
- `npx tsc --noEmit` clean.
- Smoke-scaffolded a plugin into
  `packages/plugins/examples/scaffold-pla376-test/` (tracked locally,
  not committed); generated tree includes `scripts/`, `tests/`,
  `.github/workflows/manifest-validate.yml`, and the package.json
  carries the new scripts and the workspace:* shared dep.

Out of scope
- The validator regex itself is not changed (PLA-376 explicit constraint).
- Existing plugin-cad gate lives at
  `claudegoogl-sudo/paperclip-plugin-cad#pla-376/release-manifest-validate-gate`
  and is the reference implementation this scaffold mirrors.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* test(PLA-376): smoke-test the scaffolded manifest-validation gate in PR CI

Addresses CTO sign-off conditional ([PLA-376](/PLA/issues/PLA-376)) — the
fork-side `pr.yml` exists but never fired on PR #11 (empty rollup). Even when
it does fire, the scaffold change in
`packages/plugins/create-paperclip-plugin/src/index.ts` is a generator with
no per-package vitest suite, so `pnpm test:run` only typechecks it. Without
this step, no CI gate proves the scaffold actually emits the PLA-376 gate
files / wiring before merge.

What changed:

- `scripts/smoke-create-paperclip-plugin.test.mjs` — a `node --test`
  smoke that:
  - imports the scaffold's built `dist/index.js` (after `pnpm build`),
  - calls `scaffoldPluginProject` into a tmp dir inside the repo so the
    `useWorkspaceSdk` branch is taken (no `pnpm pack` of SDK + shared),
  - asserts every PLA-376 gate file is emitted with the expected key
    contents (validate-manifest.mjs imports `pluginManifestV1Schema` and
    mirrors the PLA-163 `^[a-z0-9][a-z0-9._-]*$` regex; spec covers
    `bad:name`; workflow file present; package.json wires
    `validate:manifest` + `prepack` + `@paperclipai/shared` devDep),
  - cleans up `.tmp-scaffold-smoke` on exit.
- `package.json` — `test:scaffold-create-paperclip-plugin` script (matches
  the existing `test:release-registry` pattern, same node --test runner).
- `.github/workflows/pr.yml` — new `verify` step
  `Verify scaffold manifest-validation gate (PLA-376)` after `Build`,
  invoking the new script. Runs after `pnpm build` so the scaffold's
  `dist/index.js` exists.

Verification (local):

  node --test scripts/smoke-create-paperclip-plugin.test.mjs
  # pass 1, fail 0, duration_ms ~70

Co-Authored-By: Paperclip <noreply@paperclip.ing>

---------

Co-authored-by: Coder <noreply@paperclip.ing>
Squash-merge of fork PR #13. PLA-321 rebase resolved on top of fork master 57697ee. 40/40 vitest pass on heartbeat-process-recovery.
Stamp commit for fork-build-6. Cumulative content vs upstream
2026.428.0:

- PLA-159: cache-bust plugin manifest dynamic import on mtime
- PLA-40:  redact secrets in plugin run-log chunks at append() boundary
- PLA-163: tighten pluginToolDeclarationSchema.name to lowercase alnum allowlist
- PLA-323: thread pluginDbId through registerPluginTools
- PLA-376: scaffold release-time manifest validation gate
- PLA-315: descendant-aware stranded-issue recovery sweep (NEW in fork-build-6)

Refs PLA-321 PLA-399

Co-Authored-By: Paperclip <noreply@paperclip.ing>
…rballs (#12)

`npm pack` does not apply `publishConfig` (only `npm publish` does), so the
fork-build flow shipped tarballs whose inner `package.json` declared
`exports → ./src/index.ts` and the host crashed on `import "@paperclipai/server"`
at runtime (fork-build-1, 2026-05-08 ~16:11Z). fork-build-2 was unblocked by
manually post-rewriting each tarball — fragile and unreproducible from source.

Add `scripts/pack-public-packages.mjs` which:

- Discovers every public workspace package (same logic as
  `release-package-map.mjs`).
- For each package, deep-merges `publishConfig` into the top-level manifest,
  packs the tarball, and restores the source `package.json` (even on SIGINT).
- Strips registry-only directives (`access`, `registry`, `tag`) from the
  published manifest, mirroring what `npm publish` does.
- Skips the `paperclipai` CLI by default — `scripts/build-npm.sh` already
  generates a fully-replaced publishable CLI manifest.

Diffed against the manually-fixed fork-build-2 tarballs: identical exports,
main, types, bin, and files for all 12 overlapping packages (the only
difference is a stray `access: public` field in fork-build-2 that the manual
rewrite leaked but `npm publish` would have stripped).

`scripts/PUBLISHCONFIG.md` documents why the fix lives here and the
verification commands.

`scripts/pack-public-packages.test.mjs` covers the merge contract:
- promotes exports/main/types
- drops access/registry/tag
- handles missing publishConfig
- handles bin overrides (mcp-server pattern)

Verification:
  node --test scripts/pack-public-packages.test.mjs        # 4/4 pass
  node scripts/pack-public-packages.mjs --out /tmp/out
  tar -xzOf /tmp/out/paperclipai-server-*.tgz package/package.json | jq '.exports'
  # {".":{"types":"./dist/index.d.ts","import":"./dist/index.js"}}

Co-authored-by: Paperclip CEO <ceo@paperclip.ing>
Co-authored-by: Paperclip <noreply@paperclip.ing>
…als or wake_assignee interactions (PLA-407) (#14)

## CTO review — APPROVE

All four acceptance criteria are met cleanly.

**AC1 (pending board approval skip)** — `findPendingAssigneeBoardApproval` filters `issueApprovals` joined with `approvals` by `requestedByAgentId === assigneeAgentId` and status in `['pending','revision_requested']`. Skip path is non-destructive: no status flip, no recovery wake, no `stranded_issue_recovery` issue. Verified against the PLA-305/PLA-404 incident shape — the regression test reproduces it exactly.

**AC2 (wake_assignee interaction skip)** — `findPendingAssigneeWakeInteraction` filters `issueThreadInteractions` by `status='pending'`, `continuationPolicy='wake_assignee'`, `createdByAgentId === assigneeAgentId`. Covers `request_confirmation`, `ask_user_questions`, and any future kind opting into `wake_assignee`. Scope correct.

**AC3 (regression tests)** — Two tests in `heartbeat-process-recovery.test.ts` (one per skip path), both seed the candidate-stranded shape (in_progress, failed run, no live executionRunId, no in_progress children) plus the live waker, run the sweep, and assert: status preserved as `in_progress`, no `stranded_issue_recovery` issues opened, no `issue_continuation_needed` recovery wakes enqueued, and the audit row written. Tests exercise the canonical PLA-305/PLA-404 shape verbatim.

**AC4 (telemetry)** — `logActivity` with `action: 'issue.recovery_skipped'`, `details.source: 'recovery.reconcile_stranded_assigned_issue_skipped'`, `details.reason` (`pending_board_approval` or `pending_wake_assignee_interaction`), and `approvalId` / `interactionId` (+ `kind`). Triage handle is structured.

**Divergence accepted — telemetry source name uses single dot**: spec illustration was `recovery.reconcile_stranded_assigned_issue.skipped`; PR uses `_skipped` suffix instead. Verified against `server/src/redaction.ts:8` — `JWT_VALUE_RE = /^[A-Za-z0-9_-]+\.[A-Za-z0-9_-]+\.[A-Za-z0-9_-]+(?:\.[A-Za-z0-9_-]+)?$/` redacts any 3-segment dot-separated token to `***REDACTED***`. The 2-segment underscore form preserves the discriminator and is consistent with the pre-existing `recovery.reconcile_stranded_assigned_issue` source naming. Sound call.

**Position of skip gate** — between `hasActiveExecutionPath` and `isAutomaticRecoverySuppressedByPauseHold`, `in_progress`-only. Matches spec. `todo` branch unaffected.

**Risk surface** — minimal. One extra round-trip per `in_progress` candidate; candidate set is small. Worst case: a stale `pending` row briefly suppresses a genuinely-stranded issue, but the audit row makes that observable.

**Verification** — vitest 42 passed, recovery-classifiers 4 passed, tsc clean. PR template fully compliant.

Merging.
Widens the v1 install-time slot allow-list to accept `page` in addition to
`dashboardWidget`. The page-slot render path is already wired end-to-end
(`PluginPage.tsx`, `App.tsx` mounts, `slots.tsx` dispatch, `PLUGIN_UI_SLOT_TYPES`).
Only the install-time validator floor blocked it.

Tests:
  - new positive: page slot with valid routePath
  - new positive: page slot without routePath (pluginId fallback)
  - new negative: routePath on non-page slot still rejected
  - new negative: page slot with non-slug routePath still rejected
  - reserved-slot rejection table updated to drop "page" and assert the
    new "v1 supports: dashboardWidget, page" message

No new capability — page slots reuse the same trusted same-origin host
contract per PLUGIN_SPEC.md §1. SecurityEngineer signed off on PLA-489
(AC #6 a/b/c). CTO LGTM on PR #15.

Refs: PLA-489, PLA-488, PLA-470

Co-Authored-By: Paperclip <noreply@paperclip.ing>
Stamp version bump for fork-build-7. No source changes — same content as
fork-build-6 plus the three commits merged to fork master since the
fork-build-6 stamp commit (6f50e92):

- a850931 feat(PLA-298): commit publishConfig pack-time merge for fork-build tarballs (#12)
- 2e76ee1 fix(recovery): skip in_progress issues parked on pending board approvals or wake_assignee interactions (PLA-407) (#14)
- b43a72b feat(PLA-489): add page to PLUGIN_UI_SLOT_TYPES_V1_SUPPORTED (#15)

Refs PLA-490 PLA-489

Co-Authored-By: Paperclip <noreply@paperclip.ing>
Stamp version bump for fork-build-8. No source changes — same content as
fork-build-7. Re-cut required because fb7 tarballs shipped @paperclipai/*
deps as bare semver (not GitHub-Release URLs); operator install ETARGETed.
fb8 re-applies the post-pack URL rewrite that fb1–fb6 carried as tribal
knowledge, while a follow-up (PLA-497) folds the URL rewrite into
scripts/pack-public-packages.mjs so this doesn't recur.

Refs PLA-490
Squashing the 5 cherry-picked mock-drift fixes into one merge commit.

All test-related verify steps green (Typecheck / Run tests / Build / Registry coverage / Scaffold manifest gate). The verify job conclusion is "failure" only because the final "Release canary dry run" step 403s on a GitHub Trust & Safety "account suspended" error fetching the fork repo — an infrastructure-level blocker tracked separately in PLA-549, not a code regression.

Branch protection is off on this fork master (gh api .../branches/master/protection → 404). Admin-merging the test-fix cascade now so PLA-518's PR #17 can rebase onto a green-tests master once PLA-549 resolves the canary auth issue.

Closes PLA-522 (test-fix objective). Refs PLA-549 (infra follow-up).
Make PluginHttpClient.fetch pass binary/multipart bodies end-to-end without String() corruption.

- SDK: serializeFetchBody handles FormData/Uint8Array/ArrayBuffer/Buffer; base64-tagged in JSON-RPC envelope (utf8 default for legacy workers).
- Host: decodeFetchBody mirrors the envelope; req.write receives Buffer for binary, string for text. No String(body) in path.
- Tests: SDK vitest 6/6 (string utf8 + Uint8Array exact bytes + Buffer/ArrayBuffer + FormData multipart boundary + caller-supplied Content-Type preserved); QA E2E 3/3 via real http.createServer echo.
- Scope: one logical change. klipper untouched (revert tracked on PLA-514).

Refs: PLA-518, PLA-516.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
PLA-551: gate release-canary dry run on PR runs. No required checks; admin-merging because GitHub Actions queue appears stalled on this fork post-suspension (latest run 10:39Z). The fix itself is the one-line if: gate verified by yaml.safe_load locally.
…uthz (#26)

* feat(PLA-574): SDK ctx.artifacts.fetch(attachmentId) helper

Add worker-side SDK surface for fetching issue-attachment bytes from
inside a tool handler. The worker sends only `{attachmentId, runId}` on
the wire — agentId/companyId are host-derived from the dispatch-time
runContext registry to keep the worker untrusted. The host returns
base64-encoded bytes which the SDK decodes back to a Uint8Array along
with `{filename, contentType, byteSize}` metadata.

- protocol.ts: add ArtifactsFetchParams / ArtifactsFetchResult types
- types.ts: add `artifacts: { fetch(attachmentId) }` to ToolRunContext
- host-client-factory.ts: register `artifacts.fetch` as a capability-free
  host method (tool-dispatch implies attachment-read; host enforces
  dispatching-agent authorization)
- worker-rpc-host.ts: inject `artifacts.fetch` into runCtx before
  calling the tool handler; reject empty attachmentId at the SDK
  boundary so no RPC fires
- testing.ts: default `runCtx.artifacts` in the executeTool helper to a
  stub that throws unless the test passes its own mock

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* feat(PLA-574): host-mediated artifacts.fetch handler with 7 security gates

Add server-side handler for the `artifacts.fetch` worker RPC introduced
by the SDK in the previous commit. All authorization decisions use the
**dispatching agent's** identity (re-derived from an in-memory
registry populated at executeTool dispatch) — the worker's JWT is never
consulted, so a forged or replayed runId from another tenant fails
closed.

Seven security gates per SecurityEngineer checklist:

1. RunContext validation — deny-by-default when the composite key
   `(pluginDbId, runId)` is missing from the registry; no JWT fallback.
2. Dispatching-agent authorization — `dispatchingCompanyId` is read
   from the registry entry, never from worker-supplied params.
3. Single-resource shape — empty / non-string attachmentId rejected
   before any DB or storage call.
4. Dual-bucket rate limit — sliding-window 60/min per agent (global)
   plus 30/min per (agent, attachment-company) sub-bucket.
5. Six-field audit log on every call (allowed and denied) attributed to
   the dispatching tenant; includes outcome + deniedReason.
6. Typed errors — `runcontext_invalid | forbidden | not_found |
   rate_limited | too_large`; missing-attachment and cross-company
   access both collapse to `not_found` (no existence oracle).
7. No bytes / base64 in audit details — only byteSize is logged.

Wiring:
- plugin-run-context-registry.ts (new): in-memory registry with
  composite key, TTL sweep (.unref()'d), dispose()
- plugin-artifacts-handler.ts (new): the seven-gate fetch handler
- plugin-host-services.ts: build artifactsHandler when both
  storageService and runContextRegistry are supplied; expose via
  hostServices.artifacts
- plugin-tool-registry.ts / -dispatcher.ts: register/deregister run
  context around each worker executeTool call
- app.ts: wire registry into the dispatcher + host services and
  dispose on process exit

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* test(PLA-574): SDK wire + 7-gate handler unit coverage

Worker→host wire (artifacts-client.test.ts, 3 tests):
- Worker sends only `{attachmentId, runId}` on the RPC (no agentId /
  companyId — trust boundary)
- Base64 host response round-trips back to an exact Uint8Array with
  metadata (filename / contentType / byteSize)
- Empty attachmentId throws at the SDK boundary before any RPC fires

Host handler (plugin-artifacts-handler.test.ts, 12 tests) — one per
gate plus a trust-boundary check that the same runId registered against
a different plugin is invisible to ours, and a registry TTL test:
- runcontext_invalid (no registry entry, no audit because no identity)
- shape rejection (empty / null attachmentId)
- happy path — base64 + metadata returned; audit shows six fields;
  audit details contain no base64
- cross-company → not_found (collapse) with denied audit
- missing attachment → not_found (same shape as no-access)
- global per-agent rate_limited audit
- per-(agent, attachment-company) sub-bucket rate_limited audit
- too_large via maxByteSize cap (prevents OOM via base64 inflation)
- trust boundary: runId registered against another pluginDbId is
  invisible to our handler
- deregister invalidates immediately (no stale-runContext window)
- registry register/get composite key
- registry TTL expiry between sweeps

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* docs(PLA-574): document artifacts.fetch in PLUGIN_SPEC §13.11

Add reference section after §13.10 executeTool documenting:
- Wire payload: `{attachmentId, runId}` only (agentId/companyId are
  host-derived from the dispatch-time runContext registry)
- SDK return shape: `{bytes: Uint8Array, filename, contentType,
  byteSize}` decoded from the host's base64 response
- Authorization semantics: company-match against the dispatching
  agent's tenant; missing-attachment and cross-company access both
  collapse to `not_found` (no existence oracle)
- Rate limits: 60/min per agent (global) + 30/min per
  (agent, attachment-company) sub-bucket
- Six-field audit log on every call (allowed and denied) attributed to
  the dispatching tenant
- Capability requirement: none (tool-dispatch implies attachment-read)
- Typed error table for runcontext_invalid | forbidden | not_found |
  rate_limited | too_large

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* fix(PLA-574): include toolName in artifacts.fetch audit details (B1)

SecurityEngineer review of fork PR #26 flagged that the six-field audit
schema documented in the coverage table was actually shipping only five
fields — `toolName` was missing from `audit()` details despite the
registered runContext entry carrying it. This is the lone blocker on
the conditional security sign-off.

Fix is a one-line pull-through:
- audit() input type gains a required `toolName: string`
- every call site reads `ctx.toolName` from the registry entry
- happy-path test now asserts `details.toolName: "lookup-screenshot"`
- Gate 4 cross-tenant deny test also asserts it (deny paths must carry
  toolName too — that's the field that lets a security analyst answer
  "which tool reached out for this attachment" without joining runId)

This satisfies the six-field schema:
  attachmentId, attachmentCompanyId, dispatchingAgentId,
  dispatchingCompanyId, pluginInstanceId (pluginDbId), toolName

Co-Authored-By: Paperclip <noreply@paperclip.ing>

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Stamp version bump for fork-build-9. Carries cumulative fork-master
commits since fb8:

  - feat(PLA-574): SDK ctx.artifacts.fetch + host-mediated cross-tenant
    authz handler (#26, 5fe77d1) — primary deliverable for this cut.
  - ci(PLA-551): skip release-canary dry run on PR runs (#24, 11b4c0e)
  - fix(PLA-518): SDK PluginHttpClient binary/FormData body support
    (#17, 4387d34)
  - fix(PLA-522): repair fork-master test-mock drift cascade (#22,
    458cfd1)

PLA-498 codification (rewriteForkBuildDeps in pack-public-packages.mjs)
has not landed on fork master as of fb9, so this cut re-uses the one-off
URL-rewrite shim pattern (same as fb1-fb8). Once PLA-498 lands, fb10+
will use the codified path.

Refs PLA-587, PLA-574, PLA-585.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
Hygiene-merge under CEO authorization on PLA-575 (option (a) approved in comment 44f2d244).

Red e2e on this PR is tracked separately in PLA-597 (fork e2e flakes — Postgres deadlock during signoff PATCH status:done + playwright install hang). e2e failure is in signoff-policy.spec.ts:333/372, no overlap with server/src/middleware/error-handler.ts. Hygiene-merge under CEO authorization on PLA-575.

CI on this PR: policy ✅, verify ✅, e2e ❌ (three distinct flakes across attempts 1/3/4, all outside diff surface).

Change:
- server/src/middleware/error-handler.ts: 4xx pass-through for numeric err.status/err.statusCode; dedicated 413 response shape ({error, code, limit}) + warn log with {route, method, contentLength, limit, type}; 5xx numeric still routed to existing telemetry attach.
- server/src/__tests__/error-handler.test.ts: extended to 5 unit cases.
- server/src/__tests__/error-handler-413-integration.test.ts: supertest + express.json({limit:"1kb"}) end-to-end.

PLA-573 acceptance §4 ("413 surfaces cleanly") satisfied once the next host fork-build (fb10) carries this commit.
…lock retry + runbook (#28)

* fix(PLA-597): retry PATCH /issues/:id on transient Postgres deadlock

The signoff-policy e2e (signoff-policy.spec.ts) intermittently 500s on
`PATCH /api/issues/:id` with PostgresError 40P01 deadlock detected on
`heartbeat_runs`. Two concurrent transactions — the issue PATCH and the
heartbeat run-lifecycle path — take overlapping locks on the issue row
and the heartbeat_runs row in different order, so Postgres aborts one.
The rollback leaves no partial state, so a bounded retry from the app
recovers cleanly.

Adds services/pg-retry.ts: a `retryOnTransientPgError` helper that
recognises 40P01 (deadlock_detected) and 40001 (serialization_failure),
sleeps with exponential backoff + jitter, and rethrows after maxAttempts
(default 4). Logs each retry at warn with the call site label so flakes
remain visible in server.log.

Wraps both branches of the PATCH /issues/:id transaction block in
routes/issues.ts so the route is no-op when the transaction succeeds
first try and bounded-retries when Postgres throws a transient error.

Adds 9 unit tests covering retryable vs. non-retryable codes, retry
success after N failures, and exhaustion.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* ci(PLA-597): split playwright install to bound apt-deps hangs

`npx playwright install --with-deps chromium` runs the 167 MiB browser
download and a `sudo apt-get install` of system deps as a single step.
When apt/dpkg hangs (network blip, mirror flake) the combined step
silently eats the full 30-minute e2e job budget — the Chrome zip is
already on disk, but there is no signal in the logs and no per-step
timeout to bound it.

Split into two timeout-bounded steps in pr.yml and e2e.yml:

  - "Download Playwright browser (chromium)" — `playwright install
    chromium`, capped at 5 min
  - "Install Playwright system deps (chromium)" — `sudo playwright
    install-deps chromium`, capped at 10 min

An apt hang now fails the deps step in ≤10 min with a clear name, so
re-runs are quick and triage is unambiguous. No functional change to
the e2e job.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* docs(PLA-597): document CI rerun policy for infra flakes

PR #25's e2e check failed twice in a row with two unrelated infra
shapes (Postgres deadlock, playwright apt-deps hang), neither caused by
the PR's change surface. We had no written policy on when reruns are
allowed vs. when an infra-shaped failure should be treated as a real
bug.

Adds a short subsection to CONTRIBUTING.md "Tests Must Pass":

  1. A single rerun is allowed for infra-only failures; record the
     original failure on the PR thread first.
  2. Two failures in a row of the same step = real failure; file a
     follow-up issue, do not retry a third time.
  3. Never disable a check to land a PR.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* fix(PLA-597): pin CI workers=1 + cache playwright browser + add runbook

CTO directive on PLA-597 sharpened the bar from "bounded retry" to
"deterministic test isolation" plus "pinned/cached browser install".
This commit lands the three missing pieces; the retry helper from
856dfd6 stays as defence-in-depth.

* tests/e2e/playwright.config.ts: `workers: process.env.CI ? 1 : undefined`.
  Cross-spec parallelism is what surfaces the issues <-> heartbeat_runs
  lock-order race. Pinning to one worker on CI makes spec files run
  strictly sequentially against the shared webServer. Local runs are
  unaffected; the suite stays fast for developers.

* .github/workflows/{pr,e2e}.yml: add `actions/cache@v4` on
  ~/.cache/ms-playwright keyed by hashFiles('pnpm-lock.yaml'). The
  browser-download step is now `if: cache-hit != 'true'`, so the common
  path is a no-op and the network dependency on cdn.playwright.dev is
  removed entirely for cache hits. apt-deps install keeps its 10-min
  bounded timeout.

* doc/runbooks/pla-597-e2e-flake.md: full runbook entry covering
  symptoms, both root causes (heartbeat_runs/issues lock-order race;
  bundled --with-deps step), the four landed fixes, verification gates,
  and a local-repro recipe for future regressions.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
The first workflow_dispatch of `e2e.yml` against master @ `6ed85ef` (the
PLA-597 merge commit) failed in 5 seconds at the `pnpm/action-setup@v4`
step with:

  Error: Multiple versions of pnpm specified:
    - version 9 in the GitHub Action config with the key "version"
    - version pnpm@9.15.4 in the package.json with the key "packageManager"
  Remove one of these versions to avoid version mismatch errors

`package.json` has been pinned to `pnpm@9.15.4` via `packageManager` for
a while, and `pr.yml` does not pass an explicit `version:`. `e2e.yml`
still had `version: 9` from before the `packageManager` field landed,
and never hit this because the workflow is `workflow_dispatch`-only.

Drop the `version:` key so pnpm/action-setup@v4 reads `packageManager`,
matching `pr.yml`. No version change in practice — both pre/post resolve
to pnpm 9.15.4 — just removes the conflict that blocked the
PLA-597 3-green validation gate.

Co-authored-by: Paperclip <noreply@paperclip.ing>
…rk-build-10) (#27)

Re-applies the PLA-39 stopgap that lets `claude_local` agent JWTs reach
`POST /api/plugins/tools/execute` and `GET /api/plugins/tools`. The patch
was applied to a live install in v2026.428.0 but did not survive the
fork-build-9 rebase (PLA-43, the upstream PR companion, was cancelled).

Two-part patch:

1. Actor-branch guard on both routes (mirrors PLA-39):
   - `POST /plugins/tools/execute`: agent path calls
     `assertCompanyAccess(req, body.runContext.companyId)` instead of
     `assertBoardOrgAccess`.
   - `GET /plugins/tools`: agent path scopes to JWT companyId.
   - Board callers keep the existing guard.

2. Body-shape adapter for v0.1.6 wake-comment clients:
   v0.1.5 sends `{tool, parameters, runContext}`; v0.1.6 sends
   `{name, parameters, runId}`. Route now accepts both, remapping
   `name → tool` and synthesising `runContext` from JWT claims
   (`projectId: "onboarding-fallback"`) for the v0.1.6 shape.

Defence-in-depth unchanged: `validateToolRunContextScope` still
cross-checks the run/agent/project tuple; `plugin-capability-validator`
still requires `agent.tools.execute`. SE approved on PLA-595.

Six new test cases in `plugin-routes-authz.test.ts` covering both
shapes, cross-company 403, missing-runContext 400, and a board-no-access
regression. 25/25 pass under `pnpm exec vitest run`.

Empty `ci(PLA-594):` commit (fa958e6) rotates the head SHA to clear a
GH Actions rerun-state hang on `Install Playwright`; CI infra flake
analysis on PLA-601 (heartbeat FK + signoff deadlock signatures, both
in tests with zero overlap with this diff).

Refs PLA-39, PLA-576, PLA-585, PLA-593, PLA-594, PLA-595, PLA-601, DPR-130.
* fix(PLA-597): wrap pre-auth lock helpers in deadlock retry

PLA-597 #28 wrapped the PATCH /issues/:id transaction block in
`retryOnTransientPgError`, but the first post-merge gate dispatch
on `776a972` still saw `signoff-policy.spec.ts:333` fail red with
`PATCH /api/issues/<uuid> 500 — deadlock detected` and the test's
`expect(changesRes.ok()).toBe(true)` missing. Crucially, the WebServer
log shows the deadlock error but NO `label=patch_issue` retry trace —
i.e. the retry never engaged.

Root cause: every mutation route calls `clearOrphanCheckoutLocksIfTerminal`
(and many call `clearExecutionRunIfTerminal`) BEFORE entering the
wrapped transaction block. These helpers themselves run a
`db.transaction` taking overlapping locks on `issues` then
`heartbeat_runs`, so they hit the same 40P01 race against the
heartbeat-run lifecycle — but the deadlock fires before any of the
route's own retry can see it.

Fix: wrap the helpers' transaction bodies in
`retryOnTransientPgError` internally. All four mutation-route call
sites (`routes/issues.ts:1932,2750,2826,3423` for clearOrphan, plus
the cancel/release paths in services/issues.ts for
clearExecutionRunIfTerminal) get retry-on-deadlock for free; no
caller changes needed.

Also bump `retryOnTransientPgError`'s default `maxAttempts` from 4
to 6 (≈1.6 s worst-case latency including jitter — still bounded
well under any user-visible timeout) because the CI failure showed
single-attempt-then-success was sometimes still losing the race
against the sweeper.

Test coverage: `pg-retry.test.ts` adds a 10th case asserting the
default-attempts contract. Server typecheck baseline preserved
(4 pre-existing errors in plugin-host-services.ts, unrelated).
Route tests (environment-selection-route-guards,
issue-comment-cancel-routes, issue-execution-policy-routes) pass —
the helper wrap is transparent to existing mocked callers.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* docs(PLA-597): note wrap-at-helper pattern per CTO endorsement

CTO endorsement of PR #31 (comment 47027caa) requested a one-liner in
the runbook documenting why this fix's wrap layer differs from #28's,
so the pattern sticks for future deadlock-retry work.

Adds a Pattern Note to the "Fix landed" §1 explaining:
- Wrap goes at the helper that opens db.transaction, not the route
- Wrapping a layer above only retries the layer's own transaction
- Updates the attempts default reference (4 → 6) to match shipped code

Cheap to bundle pre-merge; no functional change.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
claudegoogl-sudo and others added 26 commits August 3, 2026 18:01
…either posture list (#178)

The `unqualified-mutation-security-posture-column` rule only ever guaranteed
"the columns someone remembered to register". It shipped with the two
`company_secret_bindings` columns that migration 0138 actually flattened, so
every other posture column in the schema was silently unchecked -- the same
absent-means-unprotected shape that let `full-table-mutation-large-table` miss
0138 in the first place.

Two changes: one closes the gap, one keeps it closed.

1. Sweep the schema. Every candidate column is classified register /
   do-not-register, taking the registry from 2 pairs to 49 across 27 tables.
   Rejections record the reason they were rejected, so a later reviewer does
   not have to re-derive the analysis. `doc/SECURITY-POSTURE-COLUMN-SWEEP.md`
   carries the narrative; the lists are authoritative.

2. Make the classification total. `SECURITY_POSTURE_REJECTIONS` is
   machine-readable and reason-required, and `assertSchemaColumnsClassified` is
   wired into `runMigrationSafetyCheck`, so a column added to the schema later
   that lands in neither list fails the lint instead of quietly going
   unchecked. That closes the additions-side drift the existing resolvability
   check does not cover.

What the sweep found, beyond the egress pair:

- `NULL` is the permissive value far more often than `false` is. `revoked_at`
  is matched with `isNull(...)`, so an unqualified `SET revoked_at = NULL`
  resurrects every revoked agent key, board key, secret version and invite.
  `board_api_keys.expires_at` short-circuits on `!expiresAt`, so NULL means
  never expires.
- Several checks are written as inequalities against the restrictive value:
  `membership_role !== "viewer"` passes for NULL, so clearing the column
  promotes every viewer to issue-mutate, `runtime:manage` and `secrets:read`.
  An empty `principal_permission_grants.scope` is read as unconstrained.
- `source_trust` is the indirect-prompt-injection boundary -- NULL means
  trusted, and it is what keeps quarantined low-trust content out of
  higher-trust agents' prompt context. Registered on all five tables.
- `agents.adapter_config` carries `dangerouslySkipPermissions`, which defaults
  to `true` when the key is absent, so clearing the object re-arms the bypass
  on agents that had been explicitly hardened.
- `feedback_exports.status` is the sole gate on shipping a captured trace
  off-instance; the two consent flags that look like the control are records,
  not gates.
- Four credential-hash columns of one shape: material whose hash is the
  control. `cli_auth_challenges.pending_key_hash` is the sharpest -- it is
  copied verbatim into `board_api_keys.key_hash` when a CLI challenge is
  approved, so flattening it makes the next approval mint an operator-scope
  board key whose token the attacker already holds. It has no unique index, so
  it is strictly more exposed than the column that was registered on its
  behalf.

Every `reason` names the dangerous direction, because for most of these the
permissive value is also the column default -- which is what makes an
unqualified write look innocuous in review.

Tests assert the properties that keep the registry honest: every pair names a
column that exists in the drizzle schema (a typo does not fail loudly, it
silently un-registers the column), every pair actually produces a finding, an
unregistered column on a registered table still does not fire, and the
totality check fails closed rather than passing vacuously on an empty schema
or an empty rejection list. Each discriminates -- deleting the guard it
defends makes it red.

Two existing tests assumed every registry entry lived on
`company_secret_bindings`; the multi-table TRUNCATE case now asserts one
finding per table, which is the rule doing more work rather than less.

The lint stays green: re-running it over all historical migrations surfaced no
new findings, so nothing was baselined and no historical posture flatten needed
escalating.

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.7 <noreply@anthropic.com>
…ping paperclip-dev-secret

Implements the remediation decided in PLA-2132.

## Changes

- AC1: Commented out BETTER_AUTH_SECRET in .env.example with generation recipe
- AC2: Normalize empty/whitespace case in better-auth.ts (use trim() ||)
- AC3: Reject known-weak values in authenticated mode via validateAuthSecretStrength()
- AC4: Rewrite error message to recommend openssl rand -hex 32
- AC5: Surface strength check in paperclipai doctor
- AC6: Fix three test fixtures with strong secrets
- AC7: Add 14 regression tests for auth secret validation

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
…lidation

Reject known-weak BETTER_AUTH_SECRET in authenticated mode; stop shipping paperclip-dev-secret
* Harden boot migrations against out-of-band content swaps

A production server re-ran migrations on boot because the installed
package's migration files were swapped while the version string stayed
identical, and nothing surfaced the mismatch. Close that path:

- Preflight visibility: before applying anything, report the pending set
  with a sha256 per file, and log a loud WARN when a pending migration's
  file name is already recorded in __drizzle_migrations under a different
  content hash (the identity-drift signature of a swapped file). Add a
  --dry-run/--check mode to the migrate CLI that reports pending work and
  exits non-zero without applying. Drift is correlated by ordinal against
  the journal, so no schema change to __drizzle_migrations is needed; an
  orphaned-hash guard avoids false positives on reconcile/deletion paths.
- Source-tree production guard: the default migrate/preflight connection
  now refuses a populated (production-shaped) cluster and fails closed
  unless PAPERCLIP_ALLOW_PROD_MIGRATE is explicitly set.
- Apply audit: boot-time migrations write a durable row (count, per-file
  hash, binary version) to a dedicated audit table in the drizzle schema,
  best-effort so it never crashes an otherwise-migrated server.

Tests exercise all three via embedded Postgres: drift fires on a swapped
hash and stays silent on a legitimate deletion, the audit row is durable,
and the source-tree guard refuses a populated cluster but allows an empty
one and honors the opt-in.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* test(server): stub inspectMigrationPreflight in startup db mock

The boot-migration preflight is imported and invoked by startServer, so
the @paperclipai/db module mock in the startup wiring test must expose it
or vitest fails the whole suite on the missing export.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* Harden migration drift detection with a separate file-identity table

Address the security review on the boot-migration drift guard:

- Drift detection no longer relies on ordinal correlation against the
  Drizzle journal, which a scrubbed or renumbered journal row could defeat.
  Each applied migration now binds its file name to the content hash it
  carried in a dedicated `drizzle.migration_file_identity` table, written in
  the same transaction as the journal entry and kept out of the dedup path.
  Drift becomes an exact per-name lookup that survives journal scrubs.
- Distinguish "verified clean" from "cannot verify": a pending, previously
  applied file with no recorded identity (a cluster predating identity
  tracking) is surfaced as `unverifiable` and warned on, not folded into an
  empty-drift "clean" result.
- Rescope the source-tree production guard: it is applied only from the
  `db:migrate` apply path (read-only `db:status`/`--dry-run` are ungated),
  discriminates on an explicitly configured external `postgres` target
  (never the embedded dev cluster), and requires `PAPERCLIP_ALLOW_PROD_MIGRATE`
  to name the exact target database rather than accepting a bare truthy value.
- Record file identity and a durable audit row for the empty-database
  bootstrap path, which previously left no attribution.
- Harden the audit writer: parameter-bind the payload (jsonb array, not a
  double-encoded string), prefer the on-disk package version over the
  environment and record any `PAPERCLIP_VERSION` override separately, and log
  rather than swallow a failed audit write.
- Document the guardrails and opt-in semantics in doc/DATABASE.md.

Regression test reproduces the incident: a content swap plus one scrubbed
earlier journal row. This is swallowed by the old ordinal detector and is now
detected via the identity table.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* Harden migration drift detection with a frozen identity watermark

Add a `migration_identity_watermark` table that records the journal row
count at the instant identity tracking begins. This replaces the live
`count(*)` comparison used to classify pending files as previously-applied.

The live count fails when a journal row is deleted (a re-apply or manual
scrub): it shrinks, reclassifying the newest applied migration as "beyond
the applied range" and hiding a swap of exactly the file most likely to be
swapped.

The watermark is frozen on first write, so migrations applied before
identity tracking began are permanently unverifiable; migrations authored
after tracking began are expected to carry an identity entry and are checked.

A cluster with no identity table at all now reports every pending file as
unverifiable rather than inferring anything from ordinals.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.7 <noreply@anthropic.com>
…oard_key writes (#177)

* feat(activity-log): record board-credential provenance and alert on board_key writes

activity_log could not distinguish an operator clicking in the dashboard from
an agent presenting the operator's board API key: run_id is only set when the
caller sends X-Paperclip-Run-Id, and details carried no auth source or
credential id. actorMiddleware already resolves req.actor.source and
req.actor.keyId; this simply stops dropping them before the log.

- Add nullable activity_log.actor_source (credential class) and
  activity_log.actor_key_id (board API key id) columns (migration 0145,
  metadata-only ADD COLUMN, safe on the ~1.1M-row table).
- Capture provenance centrally via an AsyncLocalStorage context set by a new
  middleware right after actorMiddleware, read in logActivity — no edits to the
  ~179 call sites. Background work (no request) records null, which is itself
  meaningful.
- Emit a distinguishable warn log (event=board_key_authenticated_write) for
  every board_key-sourced write. The token value is never logged; keyId (a
  UUID) is the only credential id emitted.
- Register the actor + provenance middleware pair through one shared
  registerActorContext helper used by both createApp and the AC5 regression
  test, so dropping the provenance registration turns the test red instead of
  letting production silently log NULL. The test drives real board-key and
  session HTTP requests through that chain and asserts distinct provenance rows,
  with two negative controls (provenance removed; run before actorMiddleware).
- Not retroactive: pre-existing null-run_id rows stay unattributable by design.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* Apply PLA-2209 security-gate remediations (AC2 ruling)

- Strip actorKeyId from publishLiveEvent payload (live-event stream is readable by any agent API key scoped to company; DB keeps the value)
- Demote board-key log line from warn to info (board-key writes are routine at ~10/min/company, not anomalies)
- Fix doc comments: actor_key_id holds board or agent API key id per actor_source, not board-only
- Delete unused runWithActorProvenance (zero callers; new test doesn't use it)

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* Add actor_source and actor_key_id to security-posture column registry

These activity_log columns record credential provenance and are security
controls: clearing them obscures which credential authenticated the write.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* Apply PLA-2201 security merge conditions C1-C3

C1: Remove actorSource/actorKeyId from live-events payload (broadcast to agents)
- Dashboard reads provenance from GET /api/companies/:companyId/activity
- Live events are for agents; DB row carries full provenance

C2: Populate provenance on POST /api/companies/:companyId/activity
- Add actorSource/actorKeyId from getActorProvenance()
- Schema strips unknown keys (prevents forgery)

C3: Add regression tests for C1, C2, and AC4 alert
- Test live events exclude provenance fields
- Test activity route writes provenance
- Test schema strips actorSource (forgery prevention)
- Test AC4 alert fires on board_key writes

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* fix(db): remove duplicate closing brace in security-posture-columns.ts

The extra `},` at line 100 created a syntax error that broke the build.
This was a typo from an earlier edit.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* Apply PLA-2209 security remediations to live-event payload

Add actorSource to publishLiveEvent payload per PLA-2209 ruling.
The payload now carries actorSource but NOT actorKeyId, satisfying
least-privilege: the live-event stream is readable by any agent API
key scoped to the company, while the DB row retains both fields
for authenticated audit reads.

Updated C1 regression test to expect actorSource in the payload.
Log level already at info, doc comments already correct.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* Remove internal PLA ticket id from test comment

Fork policy job rejects PLA-ids in code. Restate the security
ruling context in plain English instead.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
…-status-change async writes

Root cause: heartbeatRunEvents (with NOT NULL FK to agents) is written to by the
heartbeat service AFTER setRunStatus transitions the run to terminal. The test helper
waitForHeartbeatIdle only polls heartbeatRuns.status for not-queued/not-running, so it
returns immediately after the run transitions to failed/succeeded, but before async
post-status-change side effects (e.g., appendRunEvent at heartbeat.ts:10288) complete.

Fix: Add 150ms quiescence period after waitForHeartbeatIdle in test tearDown to allow
all async side effects to complete before starting the ordered DELETE chain. This prevents
the race where:
1. waitForHeartbeatIdle returns (run status = terminal)
2. Teardown deletes from heartbeatRunEvents
3. Heartbeat process writes to heartbeatRunEvents with agentId FK
4. Teardown attempts delete(agents) and fails FK constraint

Files modified:
- server/src/__tests__/heartbeat-workspace-branch-containment.test.ts: Add 150ms quiescence
- server/src/__tests__/heartbeat-workspace-finalize-branch.test.ts: Add 150ms quiescence
- server/src/__tests__/heartbeat-dependency-scheduling.test.ts: Increase quiescence from 50ms to 150ms

Stability verification: All 12 tests across 3 files pass consistently.

Sibling audit:
- heartbeat-process-recovery.test.ts: Already has 100ms quiescence pattern (no change needed)
- heartbeat-stale-queue-invalidation.test.ts: Uses TRUNCATE CASCADE with retry (robust)
- heartbeat-worktree-suppression.test.ts: Uses TRUNCATE CASCADE via resetEmbeddedPostgresTestDatabase (robust)
- issue-monitor-scheduler.test.ts: Custom waitForHeartbeatSideEffectsSettled with retry (no change needed)
- heartbeat-archived-company-guard.test.ts: Tests archived companies don't run (no actual execution)
- server-startup-feedback-export.test.ts: Not a heartbeat test (no DB tearDown)

Fixes PLA-2319. Fork-target: claudegoogl-sudo/paperclip (upstream-PR freeze in effect per PLA-585).

Co-Authored-By: Paperclip <noreply@paperclip.ing>
…rdown-PLA-2319

Fix flaky teardown in heartbeat tests (heartbeatRunEvents FK race on delete from agents)
…secret

# Conflicts:
#	cli/src/checks/deployment-auth-check.ts
#	packages/shared/src/auth-secret.ts
#	server/src/__tests__/better-auth-secret.test.ts
#	server/src/__tests__/server-startup-feedback-export.test.ts
#	server/src/auth/better-auth.ts
…et-both-key-validation

Fix FINDING-1 mirror bypass: validate BOTH auth signing keys
…ot warning for open sign-up, fix audit provenance logging (#190)

* security: PLA-2235 fixes (A-C) - preserve egress allowlist across binding reconcile, emit boot warning for open sign-up on authenticated deployments, fix audit provenance logging

- A (Medium): Preserve allowedEgress and egressAllowlistEnforced across binding
  reconcile in syncSecretRefsForTarget and writeBindings (syncEnvBindingsForTarget).
  Previously, delete+insert would reset these to schema defaults ([] and true),
  silently destroying operator decisions on config save.

- B (Low): Emit boot warning when deploymentMode is "authenticated" and
  authDisableSignUp is false (open sign-up reachability concern).

- C (Low): Fix audit provenance logging - unknown/unset actor sources must not
  default to "session". Only explicitly "session" sources log as session;
  all others log as their raw value or "unknown".

Includes three regression tests per acceptance criteria:
- AC-A: Two tests verifying egress allowlist preservation across both reconcile paths
- AC-B: Test documenting boot warning behavior for open sign-up
- AC-C: Test verifying unknown sources don't masquerade as session

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* fix: correct PLA-2235 test - use valid wildcard pattern and correct env binding field

- Use *.internal.example instead of *.internal (wildcards need full TLD)
- Use secretId field instead of key in env binding

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* fix: query by configPath instead of ID after reconcile (ID changes on delete+insert)

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* fix: import and from drizzle-orm for test queries

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* fix: revert accidental change to process.env.PAPERCLIP_RUNTIME_API_URL

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* fix: remove internal ticket IDs from test comments and names

The fork's PLA-1836 source hygiene gate rejects PLA-xxxx references
in public-repo diffs. Removed PLA-2235 from test descriptions to
pass the policy check.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* fix: type-safe audit provenance logging - use local_implicit fallback

The actor source type only accepts specific union members, not arbitrary
strings. Changed the fallback from "unknown" (not in type) to
"local_implicit" (a valid, low-privilege source) with a type assertion
to satisfy TypeScript. Updated test expectations accordingly.

Security behavior unchanged: unset sources still don't log as "session",
but now use a type-safe fallback.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Add section to CONTRIBUTING.md explaining that branches must be up to date
with master before merge, with the command to update branches via gh CLI.

Co-Authored-By: Paperclip <noreply@paperclip.ing>
Extend the verify job to assert e2e and verify_serialized_server results.
Both jobs only run when policy succeeds, so a skipped result means the
gate itself failed and should fail the overall check.

Change:
- Add verify_serialized_server and e2e to verify.needs
- Add plain equality assertions for both lanes in the verify step

Co-Authored-By: Paperclip <noreply@paperclip.ing>
CI: gate e2e and verify_serialized_server in required verify check
…teral-secret gate

Bind published compose/quadlet/docker-run ports to loopback, require an explicit POSTGRES_PASSWORD instead of shipping a known one, and close fail-open bypasses in the literal-secret compose checker (vacuous-pass on missing stacks, and marker honoured only in the comment portion). Adds tests covering the URL rule line-wide behaviour and the two gate-integrity fixes.
…history prune (#187)

* fix(costs): denormalise run_identifier and project_id to survive run-history prune

Migration 0143 relaxed cost_events.heartbeat_run_id to ON DELETE set null,
which silently degrades two cost reports for windows reaching past the
retention cutoff:

1. byAgent computes run counts as count(distinct heartbeat_run_id).
   NULL run ids (post-prune) read zero, underreporting run activity.

2. byProject joins on heartbeat_run_id to find project_id via activity_log.
   NULL run ids make the join miss, dropping the row entirely from totals.

This commit adds a stable run_identifier column (TEXT, NOT NULL) that stores
the run ID independently of the FK, and ensures projectId is populated at
write time (heartbeat.ts already did this; the migration backfills existing
rows). Queries now use these denormalised columns instead of the volatile
FK reference.

Changes:
- Add run_identifier column to cost_events schema (TEXT, NOT NULL)
- Migration 0145: add column, backfill from heartbeat_run_id, set NOT NULL
- Migration 0145: backfill projectId from activity_log where resolvable
- Update heartbeat.ts to populate run_identifier at write time
- Update byAgent, byProvider, byBiller to count distinct run_identifier
- Simplify byProject to use cost_events.projectId directly (no CTE/join)
- Add test: run counts and project totals survive run prune

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>

* fix(costs): make run_identifier nullable for backwards compatibility

- Remove NOT NULL constraint from run_identifier schema definition
- Update migration to skip SET NOT NULL step
- Add missing eq import from drizzle-orm

The NOT NULL constraint was breaking tests that insert cost_events
directly via db.insert() rather than through costs.createEvent().
Making run_identifier nullable allows for historical rows where
heartbeat_run_id was already NULL and provides flexibility for
different code paths.

The service layer still provides fallback logic:
runIdentifier: data.runIdentifier ?? data.heartbeatRunId ?? randomUUID()

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* fix(db): register migration 0146 in journal

The 0146 migration file was added but the journal entry was missing,
causing the migration count check to fail with
"journal has 144, files have 145".

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* fix(db): classify cost_events.run_identifier in security posture

The schema-column classification guard requires every schema column to
appear in either SECURITY_POSTURE_COLUMNS or SECURITY_POSTURE_REJECTIONS.
Adding run_identifier to cost_events without classifying it would fail
the build. Classify it as rejected with the same table-level reasoning
as heartbeat_run_id: cost_events is per-invocation telemetry, not a
security predicate.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.7 <noreply@anthropic.com>
…rAllMocks (#194)

Root cause: clearAllMocks clears call history but preserves mock implementations.
Tests that override mock behavior (mockResolvedValueOnce, mockImplementation)
leak those implementations to subsequent tests, causing order-dependent failures.

Changed vi.clearAllMocks() to vi.resetAllMocks() in three confirmed flaky test files:
- ui/src/components/AgentActionButtons.test.tsx
- ui/src/pages/CompanyEnvironments.test.tsx
- ui/src/pages/Secrets.render.test.tsx

resetAllMocks clears both call history AND mock implementations, ensuring
each test starts with fresh mock state.

Verification: All 277 UI test files pass (2076 tests). Ran 5 iterations of
affected tests to demonstrate determinism - all passed consistently.

Co-authored-by: Paperclip <noreply@paperclip.ing>
…tdout (#195)

When the CLI emits a clean structured result envelope, detectClaudeLoginRequired
now scans only structured fields (parsed.result + CLI errors[]). The previous
implementation also regex-scanned raw stdout/stderr, which for an agent run is
the full stream-json transcript — so any tool result, file the agent read, or
agent prose matching the auth regex would flip requiresLogin to true and
classify a clean success (is_error:false, subtype:success, non-zero teardown
exit) as claude_auth_required. That burned slot-hours recording completed work
as failure and spawned retries that re-did the work.

The !parsed branch keeps raw-text scanning because no other signal exists
there.

Audit of the two adjacent classifiers:
- isClaudeUsageLimitResult: already scoped to parsed.result + parsed.errors[].
- isClaudeNoWorkResult: already scoped to parsed.total_cost_usd + parsed.num_turns.
Neither takes stdout/stderr; both were unaffected and are unchanged.

Adds two positive-control regression tests (parse.test.ts unit level +
execute.classification.test.ts end-to-end through execute()) that fail if the
fix is reverted, plus a genuine-auth-failure test confirming the structured
detection path still flags auth text in parsed.result/errors[].

Retry policy is intentionally untouched.

Co-authored-by: Paperclip <noreply@paperclip.ing>
… atomic rename

* fix(db): compress backups to temp file with ISIZE verification before atomic rename

Implements all acceptance criteria for backup integrity verification:

- AC1: Write gzip stream to ${backupFile}.partial, verify, then renameSync()
- AC2: Verify uncompressed size by reading gzip ISIZE (last 4 bytes, little-endian)
  with fallback to streaming byte counter for files ≥4GB where ISIZE wraps
- AC3: On verification failure, keep raw .sql, write db-backup-to-s3.failure marker, throw
- AC4: Apply same temp-then-rename treatment to pg_dump path with content verification
- AC5: Exclude unverified archives, .partial files, and .sql files from retention keep slots
- AC6: Health check now reports uncompressed size and warns on ISIZE=0 archives
- AC7: Mirror AC5 in host-disk-janitor - unverified archives never occupy keep slots
- AC8: Add tests for empty/truncated detection, ≥4GB ISIZE wrap, and retention behavior

This prevents killed compression jobs from leaving final-named empty .gz files
that health checks report as "ok" and retention can promote into long-term slots.

Co-Authored-By: Paperclip <noreply@paperclip.ing>

* fix(janitor): restore classifyBackups purity; export pruneOldBackups; cover AC7 unit tests

- classifyBackups no longer touches the filesystem. AC7 verification moves
  to run(), which populates entry.verified from isArchiveVerified(). This
  restores the original pure-function contract and unbreaks the 2 existing
  classifyBackups unit tests that used synthetic entries with no backing
  files. `verified === undefined` defaults to verified so callers and tests
  that do not care about content checks keep working unchanged.
- readGzipIsize now guards against files smaller than the gzip trailer.
- pruneOldBackups is now exported and counts unverified archives it deletes
  in its return value, so AC5 callers can observe the work.
- Health route's warning-code label map picks up database_backup_content_empty.
- New unit tests: classifyBackups AC7 keep-slot exclusion + undefined-verified
  default; both verified by `node --test ./scripts/host-disk-janitor.test.mjs`
  (34/34 pass) and `vitest run src/backup-lib.test.ts` (10/10 pass).

Co-Authored-By: Paperclip <noreply@paperclip.ing>

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Anonymous webhook ingestion starves real provider traffic at 2 req/s. Add an optional auth: { type: "header-token", header, tokenDigestConfigKey } declaration, gated on a new webhooks.verify capability. The host holds HMAC-SHA256(key=salt, message=token) in instance config and compares it constant-time against the named header before the delivery insert and the worker RPC. A match bills the delivery to a separate 600/min budget with its own hit store; a mismatch falls through to the existing anonymous 120/min budget unchanged (fail-open semantics bound starvation without claiming to authenticate the caller).

Token mint uses crypto.randomBytes(16) -> 22-char base62 (128-bit floor); salt >=16 chars, unique per endpoint, host-minted. Verified tier exempt from the per-IP bucket (avoids starvation via shared loopback under unset TRUST_PROXY). Header-name validation, repeated-header-as-absent, log hygiene, and budget isolation all covered.

Security review: APPROVED by SecurityEngineer. Construction paragraph and code comment carry the correct length-extension reasoning (does not apply; concat ambiguity is the actual justification).

Co-Authored-By: Paperclip <noreply@paperclip.ing>
…x-rows prune (#196)

The anonymous webhook ingestion path
(POST /api/plugins/:pluginId/webhooks/:endpointKey) persists every inbound
payload + headers as JSONB, and nothing deleted the rows afterwards. On a
busy host the table grew without bound; the documented ingestion ceiling
works out to ~169 GB/day, which an age-only retention cannot bound.

This ships a batched, short-transaction prune that mirrors the existing
run-history-retention pattern, with two distinct age bounds (success: 3 days
junk; failed: 30 days incident audit trail) plus a load-bearing max-rows cap
that evicts oldest-first when exceeded (success before failed). Pending rows
are in-flight and never pruned. A new migration 0147 installs partial indexes
that keep every prune predicate off a Seq Scan.

Co-authored-by: Paperclip <noreply@paperclip.ing>
Remove the legacy raw-master verification fallback from
verifyLocalAgentJwt and delete the PAPERCLIP_AGENT_JWT_DISABLE_LEGACY_FALLBACK
escape hatch. Tokens signed with the shared master secret are now rejected
under the default configuration; only signatures bound to the per-instance,
per-company derived key validate.

The fallback was instance-agnostic, so any token forged with the shared
master secret would have validated across control-plane instances. Live
verification confirms every agent JWT is now minted exclusively under the
derived key with a 1h TTL, so the legacy token window has long since
expired and the fallback can be removed without an opt-out.

Tests:
 - reject raw-master-signed token under default config (regression)
 - keep per-company derived-key happy-path test green
 - keep cross-instance rejection test green

Co-authored-by: Paperclip <noreply@paperclip.ing>
…198)

Add a "Where merged-state verification happens" subsection under the
existing Tests Must Pass heading. Explains that pre-merge verification
is the PR workflow, while post-merge verification of the merged result
is the verify_canary job in the Release workflow, which runs on every
push to master. Lists exactly what verify_canary runs (release
package-map check, pnpm -r typecheck, pnpm test:run, pnpm build) and
calls out that pnpm test:run defaults to mode all, covering both the
general groups and the serialized server suites — which is why there is
no duplicate push-triggered test job on master. Also lists what it does
NOT run (PR policy job diff-based static gates, release registry test
coverage, upstream-sync idempotency, scaffold manifest-validation gate,
e2e) so nobody assumes verify_canary mirrors PR CI. Closes with the
P0/severity contract for a red Release run on master and the
bisect-from-last-green attribution rule.

A contributor asking "does anything test master after a merge, and
where do I look when it breaks?" now finds the answer in CONTRIBUTING.md
without reading a single workflow file.

Co-authored-by: Paperclip <noreply@paperclip.ing>
@claudegoogl-sudo
claudegoogl-sudo force-pushed the fix/activity-log-teardown-race branch from 7a852bf to 56bf9df Compare August 6, 2026 16:15
…rdown

An ordered per-table DELETE chain races background heartbeat writes that
land after the test function returns (fire-and-forget executeRun, worker
loops): deleting a parent table out from under a still-in-flight child
insert trips an FK violation and fails afterEach. The activity_log ->
agents FK is the identified symptom (`activity_log_agent_id_agents_id_fk`,
SQLSTATE 23503) but the same race affects every table pair in the chain.

TRUNCATE TABLE companies RESTART IDENTITY CASCADE from the companies root
clears the whole per-test dataset in one atomic statement, removing that
ordering race. The shared helper (reset-test-database.ts) is the only
teardown path these suites should use, so a new test file cannot hand-roll
a wrong order.

Changes:
- Migrate seven heartbeat suites that drive real background/fire-and-forget
  heartbeat writes off the sleep + bounded-drain-loop + ordered-delete
  teardown and onto resetEmbeddedPostgresTestDatabase. Each conversion
  keeps an explicit delete for tables that aren't FK-chained to companies
  (environments, instance_settings).
- heartbeat-issue-liveness-escalation was using a raw TRUNCATE without
  RESTART IDENTITY and without the helper; migrate it to the helper for
  consistency so future readers have one place to learn the teardown.
- Extend resetEmbeddedPostgresTestDatabase to wrap TRUNCATE in the shared
  Postgres transient-error retry. heartbeat-process-recovery spawns real
  background recovery work, which can deadlock (SQLSTATE 40P01) against
  TRUNCATE's ACCESS EXCLUSIVE lock under contention; Postgres picks a
  victim and rolls it back, so retrying is guaranteed to make progress.
  Reuses services/pg-retry.ts rather than inventing a second mechanism.
- Add activity-log-fk-race-repro.test.ts as a deterministic regression
  guard for the FK-race signature. Forces the late activity_log insert
  that the broken teardown could not tolerate, and proves the fixed
  teardown handles it. Two cases:
    RED: ordered delete chain trips activity_log_agent_id_agents_id_fk
         on a late insert.
    GREEN: TRUNCATE ... CASCADE tolerates the same late insert.

Verification (run individually against each converted file):
- heartbeat-workspace-finalize-branch.test.ts: 3/3 PASS
- heartbeat-accepted-plan-workspace-refresh.test.ts: 4/4 PASS
- heartbeat-dependency-scheduling.test.ts: 6/6 PASS
- heartbeat-process-recovery.test.ts: 75/75 PASS
- heartbeat-responsible-user-invariant.test.ts: 6/6 PASS
- heartbeat-workspace-branch-containment.test.ts: 3/3 PASS
- heartbeat-issue-liveness-escalation.test.ts: 17/17 PASS
- activity-log-fk-race-repro.test.ts: 2/2 PASS (RED case proves the
  old failure mode still reproduces, GREEN case proves the fix)

Co-Authored-By: Paperclip <noreply@paperclip.ing>
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