code-kern-ai · JWittmeyer · Jul 17, 2025 · Jul 17, 2025
diff --git a/Dockerfile b/Dockerfile
@@ -1,4 +1,4 @@
-FROM kernai/refinery-parent-images:v1.22.0-torch-cpu
+FROM kernai/refinery-parent-images:parent-image-updates-v1.22.0-torch-cpu
 
 RUN apt-get update && \
     apt-get install --no-install-recommends -y curl libgomp1 && \

diff --git a/requirements.txt b/requirements.txt
@@ -1,5 +1,5 @@
 #
-# This file is autogenerated by pip-compile with Python 3.9
+# This file is autogenerated by pip-compile with Python 3.11
 # by the following command:
 #
 #    pip-compile --output-file=requirements.txt requirements/requirements.in
@@ -8,100 +8,110 @@
 
 annotated-types==0.7.0
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   pydantic
 anyio==4.9.0
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   starlette
-boto3==1.25.0
-    # via -r requirements/torch-cpu-requirements.txt
-botocore==1.28.5
+argon2-cffi==25.1.0
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
+    #   minio
+argon2-cffi-bindings==21.2.0
+    # via
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
+    #   argon2-cffi
+boto3==1.39.6
+    # via -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
+botocore==1.39.6
+    # via
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   boto3
     #   s3transfer
-certifi==2025.6.15
+certifi==2025.7.14
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   minio
     #   requests
+cffi==1.17.1
+    # via
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
+    #   argon2-cffi-bindings
 charset-normalizer==3.4.2
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   requests
-click==8.1.8
+click==8.2.1
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   uvicorn
-exceptiongroup==1.3.0
-    # via
-    #   -r requirements/torch-cpu-requirements.txt
-    #   anyio
 fastapi==0.115.2
-    # via -r requirements/torch-cpu-requirements.txt
+    # via -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
 filelock==3.18.0
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   huggingface-hub
     #   torch
     #   transformers
-fsspec==2025.5.1
+fsspec==2025.7.0
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   huggingface-hub
     #   torch
+greenlet==3.2.3
+    # via sqlalchemy
 h11==0.16.0
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   uvicorn
 hf-xet==1.1.5
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   huggingface-hub
-huggingface-hub==0.33.2
+huggingface-hub==0.33.4
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   tokenizers
     #   transformers
 idna==3.10
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   anyio
     #   requests
 jinja2==3.1.6
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   torch
 jmespath==1.0.1
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   boto3
     #   botocore
 joblib==1.5.1
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   scikit-learn
     #   scikit-optimize
 lightgbm==4.1.0
     # via -r requirements/requirements.in
 markupsafe==3.0.2
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   jinja2
-minio==7.1.12
-    # via -r requirements/torch-cpu-requirements.txt
+minio==7.2.15
+    # via -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
 mpmath==1.3.0
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   sympy
-networkx==3.2.1
+networkx==3.5
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   torch
 numpy==1.23.4
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   lightgbm
     #   pandas
     #   scikit-learn
@@ -112,67 +122,75 @@ numpy==1.23.4
     #   xgboost
 packaging==25.0
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   huggingface-hub
     #   transformers
 pandas==1.5.1
-    # via -r requirements/torch-cpu-requirements.txt
+    # via -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
 psycopg2-binary==2.9.9
-    # via -r requirements/torch-cpu-requirements.txt
-pyaml==25.5.0
+    # via -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
+pyaml==25.7.0
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   scikit-optimize
+pycparser==2.22
+    # via
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
+    #   cffi
+pycryptodome==3.23.0
+    # via
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
+    #   minio
 pydantic==2.7.4
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   fastapi
 pydantic-core==2.18.4
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   pydantic
 python-dateutil==2.9.0.post0
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   botocore
     #   pandas
 pytz==2025.2
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   pandas
 pyyaml==6.0.2
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   huggingface-hub
     #   pyaml
     #   transformers
 regex==2024.11.6
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   transformers
-requests==2.31.0
+requests==2.32.4
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   huggingface-hub
     #   transformers
-s3transfer==0.6.2
+s3transfer==0.13.0
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   boto3
 safetensors==0.5.3
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   transformers
-scikit-learn==1.1.2
+scikit-learn==1.5.2
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   scikit-optimize
     #   sequencelearn
 scikit-optimize==0.9.0
-    # via -r requirements/torch-cpu-requirements.txt
+    # via -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
 scipy==1.13.1
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   lightgbm
     #   scikit-learn
     #   scikit-optimize
@@ -182,60 +200,58 @@ sequencelearn==0.0.9
     # via -r requirements/requirements.in
 six==1.17.0
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   python-dateutil
 sniffio==1.3.1
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   anyio
 sqlalchemy==1.4.42
-    # via -r requirements/torch-cpu-requirements.txt
+    # via -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
 starlette==0.40.0
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   fastapi
 sympy==1.14.0
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   torch
 threadpoolctl==3.6.0
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   scikit-learn
 tokenizers==0.21.2
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   transformers
-torch==2.7.1
+torch==2.7.1+cpu
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   sequencelearn
 tqdm==4.67.1
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   huggingface-hub
     #   transformers
-transformers==4.50.0
-    # via -r requirements/torch-cpu-requirements.txt
-typing-extensions==4.14.0
+transformers==4.53.2
+    # via -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
+typing-extensions==4.14.1
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   anyio
-    #   exceptiongroup
     #   fastapi
     #   huggingface-hub
+    #   minio
     #   pydantic
     #   pydantic-core
-    #   starlette
     #   torch
-    #   uvicorn
-urllib3==1.26.20
+urllib3==2.5.0
     # via
-    #   -r requirements/torch-cpu-requirements.txt
+    #   -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
     #   botocore
     #   minio
     #   requests
 uvicorn==0.35.0
-    # via -r requirements/torch-cpu-requirements.txt
+    # via -r /home/runner/work/refinery-submodule-parent-images/refinery-submodule-parent-images/refinery-ml-exec-env/requirements/torch-cpu-requirements.txt
 xgboost==2.0.1
     # via -r requirements/requirements.in