Issues

• Review/research feasibility on use on/within ACCESS

  con/mechababs#163 · Filter by author yarikoptic opened on Oct 1, 2026

• Iterate should submit "up to" some total number of jobs

  con/mechababs#162 · Filter by author asmacdo opened on Sep 25, 2026

• play with mechababs run to gather performance & explore compute-on-the-fly

  con/mechababs#161 · Filter by author asmacdo opened on Sep 16, 2026
  6

• use_cases.md: a story for campaign init at a superstudy that already carries campaigns

  automationeasy
  con/mechababs#160 · Filter by author asmacdo opened on Sep 14, 2026

• test_the_member_hint_appears_only_for_a_member fails when the checkout path contains "superstudy"

  automationeasy
  con/mechababs#159 · Filter by author asmacdo opened on Sep 14, 2026

• e2e: assert a clean tree after every command

  automation
  con/mechababs#158 · Filter by author asmacdo opened on Sep 14, 2026

• Preflight git-annex and git on PATH at CLI entry, beside the venv check

  automation
  con/mechababs#157 · Filter by author asmacdo opened on Sep 14, 2026 · M4-E2E-Automation
  1

• Cross-session datasets: anat and func in different sessions defeat session-level selection and processing (ds001499, ds001506, ds004496, ds003020)

  datasetdecisionpipeline:fmriprep
  con/mechababs#156 · Filter by author asmacdo opened on Sep 14, 2026 · M3-Hard-Datasets
  2

• fmriprep DatasetLinks.raw carries the per-job scratch abspath; should be the relative sourcedata/raw

  babs-upstreampipeline:fmriprepprovenanceupstream-NOT-FILED
  con/mechababs#155 · Filter by author asmacdo opened on Sep 10, 2026 · M2-Correct-Publishable

• ds004884: MRIQC QI2 gets NaN on a defaced T1w with zeroed air (nipreps/mriqc#1402)

  datasetpipeline:mriqcupstream
  con/mechababs#153 · Filter by author asmacdo opened on Sep 9, 2026 · M3-Hard-Datasets
  2

• ds005752: MRIQC dies on a T2w with "inhomogeneity-corrected data seem empty" (nipreps/mriqc#1406)

  datasetpipeline:mriqcupstream
  con/mechababs#152 · Filter by author asmacdo opened on Sep 9, 2026 · M3-Hard-Datasets
  1

• status and iterate re-run babs status per active cell with no --no-refresh and no progress

  automation
  con/mechababs#151 · Filter by author asmacdo opened on Sep 8, 2026

• fMRIPrep: mris_expand aborts with a buffer overflow when the nipype workdir path is long (FreeSurfer)

  decisionpipeline:fmriprepupstream
  con/mechababs#150 · Filter by author asmacdo opened on Sep 4, 2026 · M3-Hard-Datasets
  5

• run_uv gives the env_constraints advice for a path/git-source build failure

  automation
  con/mechababs#149 · Filter by author asmacdo opened on Sep 4, 2026

• A superstudy's members should be placeable under a subdirectory, not only at its root

  automationdecision
  con/mechababs#148 · Filter by author asmacdo opened on Sep 4, 2026 · M2-Correct-Publishable

• e2e: the ReproNim/containers clone should be an optional cache, not a prerequisite

  automation
  con/mechababs#147 · Filter by author asmacdo opened on Sep 4, 2026

• Drop the temporary datalad pin once a release carries datalad/datalad#7904

  automationblockedupstream
  con/mechababs#146 · Filter by author asmacdo opened on Sep 4, 2026 · M2-Correct-Publishable
  1

• mechababs jobs needs a has_results column

  automation
  con/mechababs#145 · Filter by author asmacdo opened on Sep 4, 2026 · M4-E2E-Automation

• merge should save its own study-level facts so datalad's generic aux commit does not arise

  automationprovenance
  con/mechababs#144 · Filter by author asmacdo opened on Sep 4, 2026 · M2-Correct-Publishable

• drop-dataset: there is no way to undo add-dataset

  automationdecision
  con/mechababs#143 · Filter by author asmacdo opened on Sep 4, 2026

• Retire $JOB_TMP: the container /tmp bind should not need a cluster-axis variable

  automationgeneralize
  con/mechababs#125 · Filter by author asmacdo opened on Aug 26, 2026
  3

• mechababs aggregate

  con/mechababs#123 · Filter by author asmacdo opened on Aug 24, 2026

• Growing a campaign's app bundle mid-campaign — deferred by design

  fuzzy/slop
  con/mechababs#116 · Filter by author asmacdo opened on Aug 21, 2026

• Publish mechababs to PyPI

  automation
  con/mechababs#113 · Filter by author asmacdo opened on Aug 20, 2026

• mechababs presentation

  con/mechababs#112 · Filter by author yarikoptic opened on Aug 7, 2026