Skip to content

Issues: czbiohub-sf/iohub

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

36 Open 95 Closed
36 Open 95 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Use zarr-python 3 maintenance Maintenance work NGFF OME-NGFF (OME-Zarr format)
#273 opened Feb 25, 2025 by aliddell 0.3.0
1
OME-NGFF v0.5 (with Zarr v3) implementation plan enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#271 opened Feb 18, 2025 by ziw-liu
2 tasks
0.3.0
Not parsing "multiscales" metadata if "omero" metadata is missing bug Something isn't working NGFF OME-NGFF (OME-Zarr format)
#270 opened Feb 10, 2025 by yuriyzubov 0.2.0
1
Choose a faster default compressor NGFF OME-NGFF (OME-Zarr format) performance Speed and memory usage of the code
#266 opened Jan 21, 2025 by ziw-liu 0.2.0
Nice to have: __repr__ functions for ngff nodes enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#265 opened Dec 11, 2024 by ieivanov 0.3.0
contribute to ome-zarr-models-py? NGFF OME-NGFF (OME-Zarr format) upstream Issues with upstream dependencies
#260 opened Nov 22, 2024 by d-v-b
2
Bump Python good first issue Good for newcomers maintenance Maintenance work
#258 opened Nov 6, 2024 by ziw-liu 0.2.0
Implement OME-NGFF v0.5 (Zarr v3) enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#257 opened Oct 16, 2024 by ziw-liu 0.3.0
3
test_combine_fovs_to_hcs fails bug Something isn't working NGFF OME-NGFF (OME-Zarr format)
#255 opened Oct 1, 2024 by ieivanov 0.2.0
create_position fails when inconsistent row/column capitalization is used NGFF OME-NGFF (OME-Zarr format)
#253 opened Sep 30, 2024 by ieivanov 0.2.0
1
2
Position should be a subclass of BaseFOV NGFF OME-NGFF (OME-Zarr format)
#249 opened Sep 26, 2024 by talonchandler 0.3.0
get the zarr dataset size with iohub info verbose enhancement New feature or request upstream Issues with upstream dependencies
#247 opened Sep 26, 2024 by edyoshikun 0.3.0
1
Multi-version gallery build fails bug Something isn't working CI Continuous integration documentation Improvements or additions to documentation
#239 opened Aug 8, 2024 by ziw-liu 0.2.0
CLI or similar to change the channel names. enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#236 opened Aug 5, 2024 by edyoshikun
2
TIFF UAPI TODOs documentation Improvements or additions to documentation μManager Micro-Manager files and metadata
#213 opened Mar 4, 2024 by ziw-liu
1 of 2 tasks
0.2.0
2
Add TIFF examples documentation Improvements or additions to documentation
#212 opened Feb 22, 2024 by ziw-liu 0.3.0
1
CLI to update metadata of zarr stores enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#210 opened Feb 16, 2024 by ieivanov 0.2.0
6
support ome-ngff on s3 enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#209 opened Feb 13, 2024 by d-v-b 0.3.0
5
Add tests for converting OpenCell datasets CI Continuous integration
#199 opened Oct 25, 2023 by ieivanov
better logging enhancement New feature or request
#188 opened Sep 25, 2023 by ieivanov 0.3.0
iohub appending does not change or raise warning regarding datatype NGFF OME-NGFF (OME-Zarr format) question Further information is requested
#187 opened Sep 11, 2023 by edyoshikun
1
iohub rechunk CLI enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#184 opened Sep 1, 2023 by mattersoflight
@ziw-liu
3
Test with a real HCS OME-TIFF dataset CI Continuous integration μManager Micro-Manager files and metadata
#163 opened Jul 24, 2023 by ziw-liu
5
Root path of BaseFOV μManager Micro-Manager files and metadata question Further information is requested
#157 opened Jun 29, 2023 by ziw-liu 0.2.0
2
Save grayscale data and binary masks in the OME-zarr store enhancement New feature or request NGFF OME-NGFF (OME-Zarr format)
#156 opened Jun 28, 2023 by nbathreya 0.3.0
@ziw-liu
2
ProTip! no:milestone will show everything without a milestone.