Skip to content
@dantaslab

The Dantas Lab

Popular repositories Loading

  1. resfams resfams Public

    Antibiotic Resistance annotation by profile Hidden Markov Models

    3

  2. resAnnotator resAnnotator Public

    Python 3

  3. resfams_update resfams_update Public

    Update to resfams database

    Python 1

  4. spack-gdlab-repo spack-gdlab-repo Public

    Dantas Lab's custom spack packages

    Python 1 1

  5. preclinAD_GutMicrobiomes preclinAD_GutMicrobiomes Public

    Analyses of stool microbiomes from preclinical Alzheimer disease cohorts

    R 1

  6. DOME DOME Public

    R 1

Repositories

Showing 10 of 19 repositories
  • ICUSink Public

    Scripts used for analysis in the ICU Sink project.

    Python 0 0 0 0 Updated Mar 13, 2025
  • preclinAD_GutMicrobiomes Public

    Analyses of stool microbiomes from preclinical Alzheimer disease cohorts

    R 1 MIT 0 0 0 Updated Mar 10, 2025
  • 2024_Blake_TET-resistome Public

    Data, code, and analyses for Blake (2024). Nature Communications.

    HTML 0 1 0 0 Updated Dec 20, 2024
  • 2024_Fishbein_DeVeaux_Khanna_Cdiff_DefCom_Microbiome Public

    Commensal-pathogen dynamics structure disease outcomes during Clostridioides difficile colonization

    R 0 0 0 0 Updated Dec 15, 2024
  • 2024_Sb_Probiotics_CancerMicrobiome Public

    R Script to analyze and visualize 16S amplicon data included in Gorushi, Wallace, and Prusa 2024

    R 0 0 0 0 Updated Oct 14, 2024
  • spack-gdlab-repo Public

    Dantas Lab's custom spack packages

    Python 1 Apache-2.0 1 0 0 Updated Aug 29, 2024
  • deconseq-multi Public

    Modified Deconseq to utilize multiple threads

    C 0 GPL-3.0 0 0 0 Updated Aug 29, 2024
  • NICUExposome Public

    Scripts for NICU Exposome manuscript

    R 0 0 0 0 Updated Jul 13, 2024
  • .github Public
    0 0 0 0 Updated Jul 8, 2024
  • spack Public Forked from spack/spack

    A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

    Python 0 2,400 0 0 Updated Jun 29, 2024
View all repositories