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@ebi-gene-expression-group

EBI Gene Expression Group

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  1. anatomogram anatomogram Public

    Anatomogram illustrating Expression Atlas experiments

    JavaScript 42 21

  2. scanpy-scripts scanpy-scripts Public

    Scripts for using scanpy

    Python 35 13

  3. atlas atlas Public archive

    Expression Atlas

    Java 26 5

  4. r-seurat-scripts r-seurat-scripts Public

    Scripts to install as a Bioconda package for making workflows

    R 18 4

  5. container-galaxy-sc-tertiary container-galaxy-sc-tertiary Public

    Galaxy container for single cell RNA-Seq tertiary analysis tools

    Python 17 14

  6. scxa-workflows scxa-workflows Public

    Higher level repo for aggregating all of Atlas workflow logic for Single Cell

    Shell 14 2

Repositories

Showing 10 of 186 repositories
  • atlas-web-core Public

    Business logic for single cell and bulk Expression Atlas and for the up-and-coming Expression Atlas API

    ebi-gene-expression-group/atlas-web-core’s past year of commit activity
    Java 0 1 4 1 Updated Mar 25, 2025
  • scxa-tertiary-workflow Public

    Tertiary component for SCXA workflows

    ebi-gene-expression-group/scxa-tertiary-workflow’s past year of commit activity
    Nextflow 1 1 29 (1 issue needs help) 6 Updated Mar 25, 2025
  • atlas-web-bulk Public

    Bulk Expression Atlas web application

    ebi-gene-expression-group/atlas-web-bulk’s past year of commit activity
    Java 0 Apache-2.0 1 48 5 Updated Mar 25, 2025
  • species-summary-panel Public

    Species panel for bulk Expression Atlas and Single Cell Expression Atlas

    ebi-gene-expression-group/species-summary-panel’s past year of commit activity
    JavaScript 0 0 0 1 Updated Mar 25, 2025
  • experiments-summary-panel Public

    Experiments panel for bulk Expression Atlas and Single Cell Expression Atlas

    ebi-gene-expression-group/experiments-summary-panel’s past year of commit activity
    JavaScript 0 0 0 1 Updated Mar 25, 2025
  • atlas-web-single-cell Public

    Single Cell Expression Atlas web application

    ebi-gene-expression-group/atlas-web-single-cell’s past year of commit activity
    Java 5 Apache-2.0 5 79 6 Updated Mar 25, 2025
  • atlas-components Public

    Front end components of Expression Atlas and Single Cell Expression Atlas

    ebi-gene-expression-group/atlas-components’s past year of commit activity
    JavaScript 3 3 14 3 Updated Mar 25, 2025
  • data-exports-bulk Public

    Data export module for Atlas Prod

    ebi-gene-expression-group/data-exports-bulk’s past year of commit activity
    Perl 0 MIT 1 0 2 Updated Mar 21, 2025
  • bioconductor-ExpressionAtlas Public

    Download datasets from EMBL-EBI Expression Atlas

    ebi-gene-expression-group/bioconductor-ExpressionAtlas’s past year of commit activity
    R 0 1 1 1 Updated Mar 21, 2025
  • container-galaxy-sc-tertiary Public

    Galaxy container for single cell RNA-Seq tertiary analysis tools

    ebi-gene-expression-group/container-galaxy-sc-tertiary’s past year of commit activity
    Python 17 MIT 14 26 11 Updated Mar 20, 2025
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