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@epi2me-labs

EPI2ME Labs

Bioinformatics resources from Oxford Nanopore Technologies Plc

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  1. kraken2-server Public

    Kraken2 Server

    C++ 21 4

  2. wf-transcriptomes Public

    Nextflow 91 36

  3. wf-single-cell Public

    Python 86 43

  4. wf-bacterial-genomes Public

    Small variant calling for haploid samples

    Python 34 19

  5. wf-human-variation Public

    Nextflow 120 60

  6. fastcat Public

    Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.

    C 36 4

Repositories

Showing 10 of 35 repositories
  • epi2me-docs Public
    HTML 0 0 0 0 Updated Apr 25, 2025
  • wf-artic Public

    ARTIC SARS-CoV-2 workflow and reporting

    Nextflow 50 35 11 0 Updated Apr 25, 2025
  • wf-mpx Public
    Nextflow 5 6 1 0 Updated Apr 25, 2025
  • wf-tb-amr Public
    Python 4 1 1 0 Updated Apr 24, 2025
  • wf-cas9 Public
    Nextflow 6 2 2 0 Updated Apr 24, 2025
  • ezcharts Public
    Python 19 0 0 0 Updated Apr 24, 2025
  • epi2me-labs.github.io Public
    HTML 8 2 0 0 Updated Apr 16, 2025
  • wf-single-cell Public
    Python 86 43 15 0 Updated Apr 16, 2025
  • wf-flu Public
    Nextflow 17 5 2 0 Updated Apr 16, 2025
  • wf-transcriptomes Public
    Nextflow 91 36 16 1 Updated Apr 15, 2025
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