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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 637 370

  2. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 302 77

  3. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 300 79

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 252 147

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 143 89

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 114 21

Repositories

Showing 10 of 179 repositories
  • clair Public

    Clair (Clang Introspection and Reflection) tools. A set of clang tools developed for Flatiron/CCQ

    flatironinstitute/clair’s past year of commit activity
    C++ 10 Apache-2.0 1 1 0 Updated Nov 14, 2024
  • c2py Public

    Clair/c2py low level library

    flatironinstitute/c2py’s past year of commit activity
    C++ 1 Apache-2.0 1 0 0 Updated Nov 14, 2024
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    flatironinstitute/finufft’s past year of commit activity
    C++ 300 79 53 (3 issues need help) 6 Updated Nov 13, 2024
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    flatironinstitute/neurosift’s past year of commit activity
    TypeScript 45 Apache-2.0 6 52 1 Updated Nov 13, 2024
  • spack Public Forked from spack/spack

    A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

    flatironinstitute/spack’s past year of commit activity
    Python 2 2,311 0 13 Updated Nov 13, 2024
  • nixpack Public

    nix+spack = nixpack (spanix?)

    flatironinstitute/nixpack’s past year of commit activity
    Nix 38 MIT 4 1 4 Updated Nov 13, 2024
  • flathub Public

    A simple elasticsearch frontend for serving astrophysical simulation catalog data

    flatironinstitute/flathub’s past year of commit activity
    Haskell 10 Apache-2.0 6 14 0 Updated Nov 13, 2024
  • FlatironMDCourse Public

    Flatiron Institute MD Course

    flatironinstitute/FlatironMDCourse’s past year of commit activity
    Jupyter Notebook 6 MIT 1 0 0 Updated Nov 13, 2024
  • disBatch Public

    Dynamic dispatch of a list of command-line tasks, locally or on a cluster. Supports retrying failed tasks, and adding/removing compute resources on-the-fly.

    flatironinstitute/disBatch’s past year of commit activity
    Python 39 Apache-2.0 9 8 1 Updated Nov 13, 2024
  • sciware Public

    Learning materials for scientific software development

    flatironinstitute/sciware’s past year of commit activity
    HTML 78 35 2 0 Updated Nov 12, 2024
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