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VeuPathDb -> VEuPathDB #54

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Sep 11, 2024
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Original file line number Diff line number Diff line change
Expand Up @@ -18,11 +18,11 @@ export const Questions = (): JSX.Element => {
</MAccordionSummary>
<MAccordionDetails>
BRC-Analytics is very new. Out plan is (1) establish access to
official versions of VeuPathDb’s 785 genomes; (2) develop analytical
official versions of VEuPathDB’s 785 genomes; (2) develop analytical
workflows for common analyses such as transcriptomics, variation,
assembly, and tightly integrate them with the data; (3) ingest and
provide access to custom annotations that were previously available
from VeuPathDb. To learn more click “Roadmap” on top.
from VEuPathDB. To learn more click “Roadmap” on top.
</MAccordionDetails>
</StyledAccordion>
<StyledAccordion component={DXRoundedPaper}>
Expand All @@ -32,7 +32,7 @@ export const Questions = (): JSX.Element => {
<MAccordionDetails>
I used to be able to access many types of data including genomes and
associated annotations. Where do I find it now? Data for the majority
of VeuPathDb organisms is available by clicking the “Datasets” link at
of VEuPathDB organisms is available by clicking the “Datasets” link at
the top.
</MAccordionDetails>
</StyledAccordion>
Expand All @@ -41,7 +41,7 @@ export const Questions = (): JSX.Element => {
How do I do analyses?
</MAccordionSummary>
<MAccordionDetails>
I used to rely on VeuPathDb to perform my analyses. Now that it is no
I used to rely on VEuPathDB to perform my analyses. Now that it is no
longer available, what can I do? Many types of analyses are possible
via integration with the{" "}
<DXLink label="Galaxy system" url={URLS.GALAXY_SYSTEM} /> while we
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Original file line number Diff line number Diff line change
Expand Up @@ -29,7 +29,7 @@ export const SectionHero = (): JSX.Element => {
BRC Analytics is under active development. This site will
provide data access and analytical tools for all 785 eukaryotic
pathogens, host taxa, and vectors previously served by
VeuPathDb. However, we cannot do this alone.
VEuPathDB. However, we cannot do this alone.
</span>
<span>
Use the button below to tell us about your usage patterns and
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Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,7 @@ export const SectionRoadmap = (): JSX.Element => {
<CategoryTitle>Develop data component</CategoryTitle>
<CategorySubTitle>Data harmonization and ingest</CategorySubTitle>
<CategoryText>
The list of all 785 genomes originally found in VeuPathDb will be
The list of all 785 genomes originally found in VEuPathDB will be
harmonized. This means that for each genome, we will identify the
latest official release listed at NCBI. The data will then be
ingested by the UCSC Genome Browser team to create a browser
Expand All @@ -40,7 +40,7 @@ export const SectionRoadmap = (): JSX.Element => {
<CategoryText>
A search component allowing users to perform custom queries on all
data will be developed. It will allow functionality that was
previously provided by VeuPathDb’s “search strategy” component.{" "}
previously provided by VEuPathDB’s “search strategy” component.{" "}
</CategoryText>
</Category>
<Category>
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Original file line number Diff line number Diff line change
Expand Up @@ -161,7 +161,7 @@ export const buildOrganismListHero = (): ComponentProps<
> => {
return {
children:
"If you do not see your organism in this list: it will be there! We are in the process of ingesting sequences and annotations for all 785 taxa from VEuPathDb. The table below is generated by comparing the list maintained by VeuPathDb against official NCBI genome builds. The three buttons adjacent to each taxon direct you to a page listing available analytical workflows as well as direct links to genomic data (NCBI Datasets) and a genome browser (UCSC). A comprehensive search functionality will be developed to allow complex queries.",
"If you do not see your organism in this list: it will be there! We are in the process of ingesting sequences and annotations for all 785 taxa from VEuPathDb. The table below is generated by comparing the list maintained by VEuPathDB against official NCBI genome builds. The three buttons adjacent to each taxon direct you to a page listing available analytical workflows as well as direct links to genomic data (NCBI Datasets) and a genome browser (UCSC). A comprehensive search functionality will be developed to allow complex queries.",
severity: "warning",
};
};
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