feat(core): MCP server instrumentation without breaking Miniflare

[betegon]

Closes #16826

Different approach from #16807 .

Using Proxy was causing issues in cloudflare #16182.

Now using fill we shouldn't have those problems as fill doesn't create a new wrapper object with a different identity, so now:

1. fill just replaces the method on the existing object
2. The transport object keeps its original identity
3. When transport.start() runs and accesses private fields, this is still the original transport object
4. The WeakMap recognizes it as the same object that owns the private fields

What's inside

• Tracing instrumentation
• Error handling

Tracing

It follows OTEL semantic conventions for MCP and adds more attributes we thought are useful.

It also handles PII based on user setting of sendDefaultPii.

Tracing flow

1. Transport receives tools/call request (id: 2)
2. Create INACTIVE mcp.server span
3. Store span inrequestIdToSpanMap[2] = { span, method: "tools/call", startTime }
4. Execute handler with span context (handler gets requestId: 2)
5. Handler finds span using requestId: 2
6. Tool execution happens within span context
7. Response sent with tool results
8. completeSpanWithToolResults(2, result) enriches and completes span

Error handling

1. error capture - errorCapture.ts

• Non-invasive error reporting that never interferes with MCP service operation
• Error context with MCP-specific metadata
• PII filtering respects sendDefaultPii settings
• Resilient to Sentry failures (wrapped in try-catch)

2. Tool execution error capturing - handlers.ts

• Captures exceptions thrown during tool execution
• Preserves normal MCP behaviour (errors converted to isError: true)
• Includes tool name, arguments, and request context
• Handles both sync and async tool handlers

3. Transport error instrumentation - transport.ts

• Captures connection errors and network failures
• Intercepts JSON-RPC error responses
• Includes transport type and session information
• Handles error responses being sent back to clients

[AbhiPrasad]

Very nice, all good from my eyes in overall direction!

[betegon]

Thanks @AbhiPrasad! Will keep working on this and close the other PR using Proxy. Will apply your suggestions here!