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@gymrek-lab

Gymrek Lab at UC San Diego

Code and docs produced by members of the Gymrek Lab at the University of California, San Diego.
README.md

The Gymrek Lab at UC San Diego

Welcome to our codebase!

Popular repositories Loading

  1. TRTools TRTools Public

    Toolkit for genome-wide analysis of tandem repeats

    Python 57 22

  2. EnsembleTR EnsembleTR Public

    Tools for merging Tandem Repeat VCF files

    Python 29 4

  3. LongTR LongTR Public

    Tandem repeat genotyping with long reads

    C++ 28 2

  4. webstr webstr Public

    WebSTR database and web application code

    JavaScript 7 4

  5. CAHMML CAHMML Public

    Custom Lambda HMM Library

    Python 6

  6. happler happler Public

    A haplotype-based fine-mapping method

    Jupyter Notebook 2

Repositories

Showing 10 of 12 repositories
  • happler Public

    A haplotype-based fine-mapping method

    Jupyter Notebook 2 MIT 0 7 1 Updated Apr 7, 2025
  • gymreklab.github.io Public

    Lab website and internal lab wiki

    HTML 0 22 1 5 Updated Mar 31, 2025
  • webstr Public

    WebSTR database and web application code

    JavaScript 7 MIT 4 10 2 Updated Mar 19, 2025
  • TRTools Public

    Toolkit for genome-wide analysis of tandem repeats

    Python 57 MIT 22 23 6 Updated Feb 20, 2025
  • EnsembleTR Public

    Tools for merging Tandem Repeat VCF files

    Python 29 4 3 0 Updated Feb 13, 2025
  • LongTR Public

    Tandem repeat genotyping with long reads

    C++ 28 GPL-2.0 2 2 1 Updated Feb 7, 2025
  • CITRUS Public

    Phenotype simulation tool with flexibility to model complex interactions.

    Python 0 GPL-3.0 0 0 0 Updated Dec 29, 2024
  • webSTR-API Public Forked from ciarareeve/webSTR-API

    WebSTR-API: programmatic access to WebSTR, database of Human genome-wide variation in Short Tandem Repeats (STRs)

    Python 0 MIT 4 0 1 Updated Oct 23, 2024
  • core Public

    The Gymrek Lab's core python library

    Python 1 MIT 0 1 1 Updated Sep 7, 2024
  • HipSTR Public

    This is a Gymrek lab version HipSTR.

    C 2 GPL-2.0 1 3 0 Updated Jun 4, 2024
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