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Create report about population #47
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Hi @anitacaron it looks like there is many duplicates, if you skip the family column, the table would be much more smaller. |
Yes, but I did that so it can be easily grouped by family or country of origin. Or don't you need the family information? Can I get feedback from Meriem and Mariem, please? |
Hi @mariemh23 could you please check if it's ok for you to plot the map? |
I think yes, it looks fine. |
Hi Anita, First, there seems to be a separator problem in the table. Some values have been shifted. For example, some values in the region_name column contain population_name values (e.g. line 6628). |
@mariemh23, I can fix the region_name and the family columns. However, the population_size is what is available in the ontology, and some values are missing. It would be good to discuss this with @abenkahla so I can change the ontology or just have a post-processing step to remove the symbol |
Concatenate family because this is used as a single group. Get the population region by the geographic location of the population. Note: this link is not available in the ontology, I did the change to generate the report.
@mariemh23 I've updated the table in the Google spreadsheet. Could you please check? |
Hi @anitacaron thanks for the upadtae, we just checked the table with @mariemh23, all the columns looks good excepet the family one as it's not standardized and not presented in a harmonized way. We should move forward with the map draft untill we fix the family column. |
Hi anita, |
@Melek-C let me know how I can change the family column
@mariemh23 yeah, I can do it in the spreadsheet, but this is how it's available in the ontology |
HI @anitacaron, it's a bit tricky with the family column. I think we should keep just one term in the column and select only big families (there different subfamilies). |
Maybe we could put the subfamilies in another annotation to make the ontology clearer? |
It could be interesting. |
Do we have a final decision about the family annotation for the report? 😄 |
Hi @anitacaron we are trying to fix some ambiguities with the family annotation as it's not standardized. We will back to you soon. |
Fixes #46
I'd like to make sure we have all the information needed. The report has more than 12 thousand rows, so I'll upload it in google drive and share the link to be downloaded.
Here's a sample of the table: (click on the image to see it larger)