Expose config files from ProjectFiles

[Zir0-93]

The change makes ProjectFiles expose config/support files through files(), and also:

• loads them from directories
• allows insertFile() for them
• allows removeFile() for them
• includes them in matchingFilesByName()

[chatgpt-codex-connector]

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Reviewed commit: 17cdd8117a

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[chatgpt-codex-connector]

Check file type before reading directory file content

ProjectFiles.initFilesFromDir now reads every file into memory (readFileToString) before insertFile decides whether it is a supported source/config file, so large binaries and unrelated assets in a repo are fully loaded even though they are immediately skipped. On real projects (e.g., node_modules, media files, build artifacts), this can cause major slowdowns or OOMs that did not occur when filtering by extension first.

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[chatgpt-codex-connector]

Prevent size underflow when removing zip-loaded config files

This decrement assumes every config entry was counted in size, but zip config files are still inserted via handlePotentialConfigFile without incrementing size. After this commit exposed config files/removal paths, a zip containing only tsconfig.json can produce size()==0 initially and then removeFile(...) drives it to -1, making size() inconsistent and incorrect.

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[codecov]

Codecov Report

❌ Patch coverage is 64.15094% with 19 lines in your changes missing coverage. Please review.
✅ Project coverage is 70.16%. Comparing base (d0f801e) to head (02f6cc7).
⚠️ Report is 1 commits behind head on master.

Files with missing lines	Patch %	Lines
...n/java/com/hadi/clarpse/compiler/ProjectFiles.java	64.15%	7 Missing and 12 partials ⚠️

Additional details and impacted files

@@             Coverage Diff              @@
##             master     #143      +/-   ##
============================================
- Coverage     70.26%   70.16%   -0.11%     
- Complexity      625      642      +17     
============================================
  Files            59       59              
  Lines          3000     3043      +43     
  Branches        424      442      +18     
============================================
+ Hits           2108     2135      +27     
- Misses          620      623       +3     
- Partials        272      285      +13     

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