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Hartwig Medical Foundation

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  1. hmftools hmftools Public

    Various algorithms for analysing genomics data

    Java 222 60

  2. testdata testdata Public

    Small datasets for testing purpose (FASTQ, BAM)

    21 4

  3. scripts scripts Public

    Shell 21 14

  4. pipeline5 pipeline5 Public

    Java 21 3

  5. pipeline-perl pipeline-perl Public archive

    Pipeline of tools to process raw fastq data and produce meaningful genomic data

    Perl 14 3

  6. platinum platinum Public

    Run multiple Pipeline5 instances at once

    Java 10 1

Repositories

Showing 10 of 30 repositories
  • scripts Public
    hartwigmedical/scripts’s past year of commit activity
    Shell 21 GPL-3.0 14 2 8 Updated Apr 7, 2025
  • hmftools Public

    Various algorithms for analysing genomics data

    hartwigmedical/hmftools’s past year of commit activity
    Java 222 GPL-3.0 60 15 7 Updated Apr 7, 2025
  • actin Public

    Algorithmic Cancer Treatment Initiative

    hartwigmedical/actin’s past year of commit activity
    Kotlin 0 GPL-3.0 0 0 5 Updated Apr 4, 2025
  • serve Public

    SERVE and dependencies

    hartwigmedical/serve’s past year of commit activity
    Java 1 GPL-3.0 0 0 1 Updated Apr 4, 2025
  • pipeline5 Public
    hartwigmedical/pipeline5’s past year of commit activity
    Java 21 GPL-3.0 3 0 1 Updated Apr 3, 2025
  • documentation Public

    Welcome to Hartwig Medical Foundation’s documentation site!

    hartwigmedical/documentation’s past year of commit activity
    HTML 1 3 0 0 Updated Apr 3, 2025
  • actin-interview Public

    ACTIN development interview case

    hartwigmedical/actin-interview’s past year of commit activity
    Kotlin 0 1 0 0 Updated Apr 1, 2025
  • snpcheck Public

    A post-pipeline validation which compares the results of the unifiedgenotyper against a control VCF as a final QC

    hartwigmedical/snpcheck’s past year of commit activity
    Java 0 0 0 0 Updated Mar 12, 2025
  • platinum Public

    Run multiple Pipeline5 instances at once

    hartwigmedical/platinum’s past year of commit activity
    Java 10 GPL-3.0 1 2 1 Updated Mar 4, 2025
  • cram2fastq Public

    Convert CRAM files stored in GCP to FASTQ

    hartwigmedical/cram2fastq’s past year of commit activity
    Shell 1 0 0 0 Updated Feb 28, 2025
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