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1. scifio/scifio scifio/scifio Public

   SCientific Image Format Input & Output: a flexible, extensible framework for image I/O. *EXPERIMENTAL* All API is subject to change, so depend at your own risk! See also @openmicroscopy/bioformats.

   Java 95 38

2. imagej/imagej-matlab imagej/imagej-matlab Public

   MATLAB integration with ImageJ data structures and runtime.

   Java 14 6

3. imagej/imagej2 imagej/imagej2 Public

   Open scientific N-dimensional image processing 🔬 🎇

   Java 1.2k 335

4. fiji/fiji fiji/fiji Public

   A "batteries-included" distribution of ImageJ 🔋

   Shell 815 243

5. imagej/tutorials imagej/tutorials Public

   ImageJ2 programming examples

   Jupyter Notebook 184 117

6. imagej/imagej-ops imagej/imagej-ops Public

   ImageJ Ops: "Write once, run anywhere" image processing

   Java 89 42