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Mat redesign #507

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Mat redesign #507

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Commits on Aug 11, 2024

  1. Made a universal name parser re.

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  2. Started making universal isotope parser.

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    MicahGale committed Aug 11, 2024
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Commits on Aug 12, 2024

  1. Correctly implemented string based fancy names for isotopes.

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  2. Wrote test cases to verify fancy names.

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  3. Added even more tests.

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  4. Handled the case of using a tuple as an isotope identifier.

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  5. Prototyped the how get/set should work for materials.

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Commits on Aug 13, 2024

  1. Fixed typo not making callable.

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  2. Made it possible to get material component by just an Isotope.

    @MicahGale
    MicahGale committed Aug 13, 2024
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  3. Made wrapper class for isotope library.

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Commits on Aug 14, 2024

  1. Merge branch 'develop' into mat_redesign

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  2. Played around with changing setattr

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  3. Added attribute error exception.

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    MicahGale committed Aug 14, 2024
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Commits on Aug 22, 2024

  1. Merge branch 'develop' into mat_redesign

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Commits on Aug 23, 2024

  1. Merge branch 'develop' into mat_redesign

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  2. Changed test_material to pytest.

    @MicahGale
    MicahGale committed Aug 23, 2024
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  3. Fixed typo in test due to unindent.

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    MicahGale committed Aug 23, 2024
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  4. Harmonized isotope with upstream changes to ensure default values are… 

    … set and handled.
    @MicahGale
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  5. Updated isotope str for library being a wrapper object.

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    MicahGale committed Aug 23, 2024
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  6. Started implement isotope slicing.

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  7. Wrote test case for library slicing.

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  8. Started test get/setitem for material.

    @MicahGale
    MicahGale committed Aug 23, 2024
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  9. Updated fancy_name to accept just an element outside a tuple.

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    MicahGale committed Aug 23, 2024
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  10. Made isotope library use meta-programming.

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  11. Ensure _is_atom_franction always set.

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    MicahGale committed Aug 23, 2024
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  12. Fixing bugs with get/setitem.

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    MicahGale committed Aug 23, 2024
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  13. Another fix.

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    MicahGale committed Aug 23, 2024
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  14. Avoided trying to look for non-existant isotopes.

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    MicahGale committed Aug 23, 2024
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  15. Removed magic number from Isotopes.

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    MicahGale committed Aug 23, 2024
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  16. Changed default meta_state to 0 from None.

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    MicahGale committed Aug 23, 2024
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  17. Fully embraced meta

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    MicahGale committed Aug 23, 2024
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  18. Allowed specifying an element slice by Z number.

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    MicahGale committed Aug 23, 2024
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  19. Padded library in str for pretty printing.

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  20. Allowed passing just an element for slicing.

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    MicahGale committed Aug 23, 2024
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Commits on Aug 25, 2024

  1. Started changelog for material redesign.

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    MicahGale committed Aug 25, 2024
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Commits on Sep 4, 2024

  1. Merge branch 'develop' into mat_redesign

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  2. Deleted all previously deprecated code.

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    MicahGale committed Sep 4, 2024
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  3. Updated changelog with deleted code.

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Commits on Sep 5, 2024

  1. Switched away from mat_comp dict.

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  2. Started get/set item, and base dunders.

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Commits on Sep 12, 2024

  1. Merge branch 'develop' into mat_redesign

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  2. Moved isotope to nuclide.

    @MicahGale
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  3. Refactored Isotope to Nuclide.

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  4. Started prototype for filtering isotopes.

    @MicahGale
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  5. Removed deprecated call.

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  6. Created filter prepper.

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  7. Removed hacky hashing.

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  8. Merge branch 'develop' into mat_redesign

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  9. Finished concept of finding things.

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  10. Deleted dead code.

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  11. Simplified fancy name to be string only.

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  12. Removed all material_components.

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  13. cleaned up small bugs.

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  14. Simplified tests for new interface.

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  15. Played around with hypothesis and PBT.

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Commits on Sep 13, 2024

  1. Ignore non-sense isotopes, and helped debugging.

    @MicahGale
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  2. Fixed bad format re for nuclide.

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  3. Handled case of bad string.

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  4. Temporarily fixed equals.

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    MicahGale committed Sep 13, 2024
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  5. Changed how A is sampled to be more physically accurate.

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Commits on Sep 15, 2024

  1. Made isotope fancy name more exhaustive.

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    MicahGale committed Sep 15, 2024
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  2. Fixed issue of dissapearing isomer.

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    MicahGale committed Sep 15, 2024
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Commits on Sep 16, 2024

  1. Limited A multiplier to being more physical.

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  2. Removed material_components from tests.

    @MicahGale
    MicahGale committed Sep 16, 2024
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  3. Made a lot of data_inputs as top level objects.

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    MicahGale committed Sep 16, 2024
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  4. Made elements print by reverse order and truncated.

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  5. Made iterator of material to hide valuenode.

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  6. Added elements set to cache info.

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  7. Made easier way to add new nuclides.

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    MicahGale committed Sep 16, 2024
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  8. Made it possible to find nuclide and element in material.

    @MicahGale
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  9. Setup problem.materials.Element generator.

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  10. Made Element truly immutable with slots.

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  11. Started trying to make immutable Nuclide.

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  12. Actually implemented immutable backend into Nuclide.

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  13. Updated equality to new iterator.

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    MicahGale committed Sep 16, 2024
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  14. Updated test fixture.

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    MicahGale committed Sep 16, 2024
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  15. Debugged nuclide str.

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    MicahGale committed Sep 16, 2024
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Commits on Sep 17, 2024

  1. Fixed ZAID to be treated as an int actually.

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  2. Test only that material_component is deprecated.

    @MicahGale
    MicahGale committed Sep 17, 2024
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  3. Fixed update_values to use new data_structure.

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    MicahGale committed Sep 17, 2024
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  4. Ignored new testing artifacts.

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    MicahGale committed Sep 17, 2024
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  5. Brought back new thermal test for new update_pointer.

    @MicahGale
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  6. Implemented a nuclide set hashing system.

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    MicahGale committed Sep 17, 2024
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  7. Exposed nucleus as a property.

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  8. Moved nuclide equality to mostly nucleus.

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  9. Improved nuclide sorting.

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  10. Implemented searching for materials by components.

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  11. Added enum for material libraries types.

    @MicahGale
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  12. Added default_libraries to material class.

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  13. Ignored no libary parameters.

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Commits on Sep 23, 2024

  1. Made meta class to make immutables singletons.

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  2. Made elements and nucleus singletons.

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  3. Moved get_from_fancy_name into init

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    MicahGale committed Sep 23, 2024
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  4. moved default version to 6.3.0

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  5. Optimized equality for singleton objects

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    MicahGale committed Sep 23, 2024
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  6. Added links to 6.3.1 manual.

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  7. Added opportunistic cache updates.

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    MicahGale committed Sep 23, 2024
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  8. Implemented prototype of set logic for numbered_object_collection.

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Commits on Sep 24, 2024

  1. Merge branch 'develop' into mat_redesign

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  2. Started alpha test deploy workflow.

    @MicahGale
    MicahGale committed Sep 24, 2024
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  3. Changed check version over to python.

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    MicahGale committed Sep 24, 2024
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  4. Moved GHA deploy to using python check version.

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    MicahGale committed Sep 24, 2024
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  5. Made NumberedObject more like a set.

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    MicahGale committed Sep 24, 2024
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Commits on Sep 25, 2024

  1. Created update function, and made it more optimized.

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  2. Fixed typo.

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    MicahGale committed Sep 25, 2024
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Commits on Oct 3, 2024

  1. Merge branch 'develop' into mat_redesign

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Commits on Oct 7, 2024

  1. Implemented all set operations.

    @MicahGale
    MicahGale committed Oct 7, 2024
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  2. Implemented materials.default_libraries, and change_libraries.

    @MicahGale
    MicahGale committed Oct 7, 2024
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  3. Made is_atom_fraction settable.

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    MicahGale committed Oct 7, 2024
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  4. fixed typo bug.

    @MicahGale
    MicahGale committed Oct 7, 2024
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  5. Made test for over removal.

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  6. Removed over removal pop bug.

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Commits on Oct 8, 2024

  1. Merge branch 'develop' into mat_redesign

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Commits on Oct 12, 2024

  1. Added test for #182.

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  2. Refactored isotopes Node.

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  3. Made general material parser.

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  4. Made material parser and syntax node handle parameters too.

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  5. Made material init handle arbitrary order stuff.

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  6. Finished refactor.

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    MicahGale committed Oct 12, 2024
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  7. Fixed bugs with MaterialsNode.

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    MicahGale committed Oct 12, 2024
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Commits on Oct 14, 2024

  1. Removed call to old function.

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  2. Fixed bug with comparing strings to libraries

    @MicahGale
    MicahGale committed Oct 14, 2024
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  3. Raised valueError with invalid ZAID.

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  4. Ensure stupid ZAID parsing is always handled when parsing a ZAID.

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  5. Updated fall through test for new default version.

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  6. Deprecated append to avoid confusion and find bugs.

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  7. Moved away from old append.

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    MicahGale committed Oct 14, 2024
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  8. New default!

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  9. Fixed attributeErrors.

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    MicahGale committed Oct 14, 2024
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  10. Made parser more robust with all edge cases.

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  11. Fixed name of attribute in test.

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Commits on Oct 15, 2024

  1. Added references to materials in manual.

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  2. Merge branch 'develop' into mat_redesign

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Commits on Oct 17, 2024

  1. Promoted all surfaces to be easier to access.

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  2. Updated mat clone test for new material api.

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    MicahGale committed Oct 17, 2024
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Commits on Oct 22, 2024

  1. Updated test to all setting mode with strings.

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  2. Fixed wierd bug in test that shouldn't exist.

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    MicahGale committed Oct 22, 2024
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  3. Fixed parser to not get confused by starting keyword.

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    MicahGale committed Oct 22, 2024
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Commits on Oct 30, 2024

  1. Merge branch 'develop' into mat_redesign

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Commits on Nov 2, 2024

  1. Removed strenum because that's 3.11

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Commits on Nov 7, 2024

  1. Merge branch 'develop' into mat_redesign

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  2. Ensured number is checked for mat eq.

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    MicahGale committed Nov 7, 2024
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  3. Makred add children to problem as deprecated

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    MicahGale committed Nov 7, 2024
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  4. Added add del hooks to numbered object collection.

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    MicahGale committed Nov 7, 2024
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  5. Added system to auto-add children objects.

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  6. Fully deprecated add_cell_children_to_problem.

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  7. Removed hashing support from surfaces.

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    MicahGale committed Nov 7, 2024
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  8. Added map for library suffix to particle types.

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  9. Fixed bugs with import. Now infinite recursion issue.

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Commits on Nov 8, 2024

  1. Used only final character to calssify library.

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  2. Fixed basic errors breaking everything.

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    MicahGale committed Nov 8, 2024
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Commits on Nov 12, 2024

  1. Added some default libraries default behavior.

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  2. Made method to figure out which library will be used.

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  3. Merge branch 'develop' into mat_redesign

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    MicahGale committed Nov 12, 2024
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  4. Restricted property testing to subset of libraries due to library for… 

    …mat enforcement.
    @MicahGale
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  5. Updated num_object to use internal methods more, and fix a few bugs.

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  6. Updated test to avoid reappending the same object.

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    MicahGale committed Nov 12, 2024
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  7. Removed use of halfspaces from get leaves.

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Commits on Nov 13, 2024

  1. Added flag to add input to error only once.

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    MicahGale committed Nov 13, 2024
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  2. Added error messages.

    @MicahGale
    MicahGale committed Nov 13, 2024
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  3. Added child object adder filter mechanism.

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    MicahGale committed Nov 13, 2024
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  4. Added mechanism to not add cell children everytime.

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    MicahGale committed Nov 13, 2024
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  5. Removed strenum.

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    MicahGale committed Nov 13, 2024
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  6. Split developer's guide into multiple files for clarity.

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    MicahGale committed Nov 13, 2024
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  7. Started standards for writing doc strings.

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    MicahGale committed Nov 13, 2024
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Commits on Nov 14, 2024

  1. Avoide bug if treating material like a list.

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    MicahGale committed Nov 14, 2024
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  2. Removed deprecation marks. Added example example.

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    MicahGale committed Nov 14, 2024
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  3. Fixed removed old surfaces method to not hash surfaces.

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    MicahGale committed Nov 14, 2024
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  4. Fixed collection call.

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    MicahGale committed Nov 14, 2024
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  5. Avoid added material in test.

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    MicahGale committed Nov 14, 2024
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  6. Updated MCNP problem to use proper surface removal.

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    MicahGale committed Nov 14, 2024
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  7. Fixed basic set logic implementation.

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    MicahGale committed Nov 14, 2024
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  8. Implemented eq for NumberedObjectCollection.

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    MicahGale committed Nov 14, 2024
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  9. Updated test to not rely on hashing.

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    MicahGale committed Nov 14, 2024
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  10. Removed test call to deprecated function.

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    MicahGale committed Nov 14, 2024
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