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23 changes: 14 additions & 9 deletions modules/doc/content/application_usage/tracked_apps.md
Original file line number Diff line number Diff line change
Expand Up @@ -40,15 +40,17 @@ The purpose of these lists is two fold:

### Materials

- [DiscoFluxM](https://github.com/lanl/DiscoFluxM) - Dislocation Transport-based Crystal Plasticity Material Model
- [GRIME](https://github.com/shortlab/grime) - The Grand Radiation Informed Microstructural Evolver: Coupled, spatially dependent radiation damage and microstructural evolution
- [Magpie](https://github.com/idaholab/magpie) - Mesoscale Atomistic Glue Program for Integrated Execution
- [Pika](https://github.com/idaholab/pika) - Phase-field model for micro-structure evolution of ice
- [Tardigrade](https://github.com/lanl/tardigrade) - Implementation of the micromorphic continuum theory of Eringen


### Electromagnetics, Plasmas and Additive Manufacturing

- [Apollo](https://github.com/aurora-multiphysics/apollo) - Enabling 3D electromagnetics simulation in MOOSE, using the MFEM FE library.
- [CRANE](https://crane-plasma-chemistry.readthedocs.io/en/latest/) - Chemical ReAction NEtworks for plasma chemistry and thermochemistry problems.
- [Apollo](https://github.com/aurora-multiphysics/apollo) - Enabling 3D electromagnetics simulation in MOOSE, using the MFEM FE library
- [CRANE](https://crane-plasma-chemistry.readthedocs.io/en/latest/) - Chemical ReAction NEtworks for plasma chemistry and thermochemistry problems
- [Ferret](https://mangerij.github.io/ferret/) - Kernels to implement the time-dependent Landau-Ginzburg theory of phase transitions for simulating ferroelectric materials
- [MALAMUTE](https://mooseframework.inl.gov/malamute/) - Advanced manufacturing modeling and simulation
- [Orpheus](https://github.com/aurora-multiphysics/orpheus) - Additional electromagnetics solvers in MOOSE
Expand All @@ -59,7 +61,7 @@ The purpose of these lists is two fold:
### Chemistry & species transport

- [cats](https://github.com/aladshaw3/cats) - Catalysis And Treatment Simulations (CATS) library for MOOSE
- [TMAP8](https://mooseframework.inl.gov/TMAP8/) - System-level mass and thermal transport calculations related to tritium migration.
- [TMAP8](https://mooseframework.inl.gov/TMAP8/) - System-level mass and thermal transport calculations related to tritium migration

### Geomechanics, Ground Flow, and Earth Sciences

Expand All @@ -69,9 +71,10 @@ The purpose of these lists is two fold:

### Miscellaneous

- [canary](https://github.com/aurora-multiphysics/canary) - Repository for storing tested UKAEA MOOSE demonstration problems, examples, and associated documentation
- [moopy](https://github.com/aurora-multiphysics/moopy) - Python interface that simplifies (ish) the creation of MOOSE inputs
- [Phoenix](https://github.com/rnpratoori/phoenix) - Polymer-to-HOst Evolution via INterface eXchange is a reaction-diffusion based framework to study the evolution of polymer scaffold into a neotissue under various conditions
- [Proteus](https://github.com/aurora-multiphysics/proteus) - For developing Fusion Digital Twins.
- [Proteus](https://github.com/aurora-multiphysics/proteus) - For developing Fusion Digital Twins
- [Ranger](https://github.com/idaholab/ranger) - Python-based auto-response bot that uses the GitHub API and LlamaIndex package to monitor and generate relevant responses for new discussions
- [Virtual Test Bed](https://mooseframework.inl.gov/virtual_test_bed/) - An open repository of simulations of nuclear systems
- [Isopod](https://github.com/idaholab/isopod) - Multiphysics PDE constrained optimization, mostly merged into MOOSE as the optimization module
Expand Down Expand Up @@ -106,9 +109,10 @@ Combined applications
- Mixcoatl$^{TM}$ - Conjugate heat transfer in microreactors, developed at BWXT
- MONARCH - Radiation damage modeling in semiconductors, developed at LANL
- GOLEM - Numerical simulator for modelling coupled Thermo-Hydro-Mechanical processes in faulted geothermal reservoirs, developed at GFZ Postdam
- [Okami](https://hpcgitlab.hpc.inl.gov/idaholab/okami/) - Mixed Oxide fuel studies
- Fizzy - Couples FISPACT-II to MOOSE and Cardinal for radiation activation calculations

- [Okami](https://hpcgitlab.hpc.inl.gov/idaholab/okami/) - Mixed Oxide fuel studies
- [BEEs](https://yznkxjs.xml-journal.net/en/article/doi/10.7538/yzk.2020.youxian.0515) - PWR fuel performance analysis code
- [PHOENIX](https://www.sciencedirect.com/science/article/pii/S0306454924001920) - Helicoidal cruciform fuel performance analysis code

## Legacy software

Expand All @@ -123,7 +127,7 @@ Reactor Physics

Materials, solid mechanics and fuel performance

- [Crow](https://github.com/SudiptaBiswas/Crow) - MOOSE-based mesoscale simulations for solid-state sintering.
- [Crow](https://github.com/SudiptaBiswas/Crow) - MOOSE-based mesoscale simulations for solid-state sintering
- [DGOSPREY](https://github.com/aladshaw3/dgosprey) - Discontinuous Galerkin Off-gas SeParation and REcoverY model: joint development between INL and GIT
- [HOGNOSE](https://github.com/shortlab/hognose) - CASL's mesoscale corrosion/oxidation code
- [Hyrax](https://github.com/UMThorntonGroup/Hyrax) - Zirconium hydride precipitation and growth in LWR nuclear fuel cladding
Expand All @@ -132,6 +136,7 @@ Materials, solid mechanics and fuel performance
Plasma and fusion sciences

- [Achlys](https://github.com/aurora-multiphysics/achlys) - Macroscopic tritium transport processes through fusion materials
- [Platypus](https://github.com/aurora-multiphysics/platypus) - A MOOSE-based app to enable finite element problem setup using the MFEM FE library

Fluid dynamics and Thermal hydraulics

Expand All @@ -149,8 +154,8 @@ Miscellaneous
- ELK - Former application for the electromagnetics module
- FENIX - Advanced fission reactor multiphysics simulation suite with Griffin and Pronghorn, notably to model Xenon and Samarium fission product transients
- MAMMOTH - Reactor physics application
- OSPREY - Off-gas SeParation and REcoverY for dispersed plug flow in a packed bed.
- RAT - Reactive transport problems in subsurface porous media that involves coupled physical processes of fluid flow, solute transport, biogeochemical reactions and media-solution interactions.
- OSPREY - Off-gas SeParation and REcoverY for dispersed plug flow in a packed bed
- RAT - Reactive transport problems in subsurface porous media that involves coupled physical processes of fluid flow, solute transport, biogeochemical reactions and media-solution interactions
- RATTLESNAKE - FEM Diffusion, SN, and PN code
- YAK - Common object library for INL particle transport codes
- YellowJacket - Nuclear reactor coolant chemistry