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Refine variance mappings, colony indexing, and brood summaries - #2

Merged

janaobsteter merged 21 commits into

janaobsteter:Futurefrom

gregorgorjanc:review/jana-variance-updates

Oct 26, 2026

Merged

Refine variance mappings, colony indexing, and brood summaries#2
janaobsteter merged 21 commits into
janaobsteter:Futurefrom
gregorgorjanc:review/jana-variance-updates

Commits on Sep 30, 2026
- WIP
  gregorgorjanc
  committed
  c1a9b82
- Update documentation
  gregorgorjanc
  committed
  662047d
- Exclude AGENTS.md from R package builds
  gregorgorjanc
  committed
  c7ba958
- Added h2 to mapping output
  gregorgorjanc
  committed
  6c4d9df
- Docs
  gregorgorjanc
  committed
  946a8f0
- Document heritability outputs in release notes
  gregorgorjanc
  committed
  8d83dd5
- Update documentation
  gregorgorjanc
  committed
  69aa910
- Polish of various things (pHomBrood, etc.)
  gregorgorjanc
  committed
  605301d
- Update documentation
  gregorgorjanc
  committed
  ebb8e8a
- Ignore local IDE state and generated build artifacts
  gregorgorjanc
  committed
  72b4311
- Fortifying the pHomBrood test
  gregorgorjanc
  committed
  dd323de
Commits on Oct 1, 2026
- more testing
  gregorgorjanc
  committed
  1d6010b
Commits on Oct 3, 2026
- Polish indexing, character IDs, colony vs queen ID, and AGENTS.md
  gregorgorjanc
  committed
  348249d
- Merging different worktrees
  gregorgorjanc
  committed
  59a15c4
- Update documentation
  gregorgorjanc
  committed
  90873c1
Commits on Oct 6, 2026
- Apply suggestion from @gregorgorjanc
  gregorgorjanc
  authored
  25f3b38
- Update documentation
  gregorgorjanc
  committed
  ecc27d2
- Fix empty else block in Functions_L3_Colonies.R
  gregorgorjanc
  authored
  5cfaa2c
- Apply batched suggestions from code review
  gregorgorjanc
  authored
  98aaa9b
Commits on Oct 7, 2026
- Fix colony callback dispatch and clarify parallelisation
  gregorgorjanc
  committed
  e00f9d3
- Update documentation
  gregorgorjanc
  committed
  ab45fc8

Commits

Commits on Sep 30, 2026

Commits on Oct 1, 2026

Commits on Oct 3, 2026

Commits on Oct 6, 2026

Commits on Oct 7, 2026