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janelia-cellmap
cellmap-analyze
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Scale auto-selection, skeleton radius/prune-only/morphology, dask scratch fix
- #82
#82
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davidackerman
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janelia-cellmap/cellmap-analyze:main
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feature-updates
janelia-cellmap/cellmap-analyze:feature-updates
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Jul 15, 2026
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Scale auto-selection, skeleton radius/prune-only/morphology, dask scratch fix
#82
davidackerman
merged 14 commits into
main
janelia-cellmap/cellmap-analyze:main
from
feature-updates
janelia-cellmap/cellmap-analyze:feature-updates
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Commits
Commits on Jun 25, 2026
Auto-select scale level for multiscale group paths
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Prefer finer scale over upsampling when matching target voxel size
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Support OME-NGFF 0.5 ome-namespaced multiscales metadata
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Commits on Jun 26, 2026
Write per-vertex radius as a vertex attribute on full skeletons
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Gate per-vertex skeleton radius behind write_vertex_radius (default False)
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Add entry-point guards for s0 auto-resolution (skeletonize, contact sites)
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Fix dask local-directory probe to require actual writability
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Merge branch 'skeleton-vertex-radii' into feature-updates
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Merge branch 'fix-dask-scratch-writability' into feature-updates
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Add prune_only skeleton output (keeps all original nodes + radii)
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Compute skeleton radius stats on the pruned skeleton
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Generalize skeletonize erosion into morphological_operations
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Use repo-standard connectivity rank (1/2/3) for morphology ops
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Commits on Jul 15, 2026
Use zarr create_array in scale-resolution tests for zarr 3.2 compat
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