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175 followers · 10 following

Achievements

Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: Pull Sharkx3Achievement: Arctic Code Vault ContributorAchievement: Starstruck

Achievements

Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: Pull Sharkx3Achievement: Arctic Code Vault ContributorAchievement: Starstruck

Highlights

  • Pro

Organizations

@mrc-ide @bacpop

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  1. bacpop/PopPUNK Public

    PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

    Python 97 20

  2. bacpop/pp-sketchlib Public

    Library of sketching functions used by PopPUNK

    C++ 30 8

  3. bacpop/mandrake Public

    Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding

    Python 36 2

  4. bacpop/ska.rust Public

    Split k-mer analysis – version 2

    Rust 81 5

  5. mgalardini/pyseer Public

    SEER, reimplemented in python 🐍🔮

    Python 121 27

  6. bacpop/unitig-caller Public

    Methods to determine sequence element (unitig) presence/absence

    C++ 19 3

514 contributions in the last year

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Activity overview

Contributed to bacpop/sketchlib.rust, bacpop/PopPUNK, bacpop/bacpop-website and 23 other repositories
Loading A graph representing johnlees's contributions from April 07, 2024 to April 08, 2025. The contributions are 75% commits, 10% code review, 8% issues, 7% pull requests. 10% Code review 8% Issues 7% Pull requests 75% Commits

Contribution activity

April 2025

Created 7 commits in 2 repositories
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