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Kern-Ralph CoLab

Repositories associated with the collaborary research group of Andrew Kern and Peter Ralph

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  1. diploSHIC diploSHIC Public

    feature-based deep learning for the identification of selective sweeps

    Python 54 14

  2. locator locator Public

    deep learning prediction of geographic location from individual genome sequences

    Python 49 18

  3. popvae popvae Public

    genotype dimensionality reduction with a VAE

    Python 44 9

  4. ReLERNN ReLERNN Public

    Recombination Landscape Estimation using Recurrent Neural Networks

    Python 55 11

  5. spaceness spaceness Public

    Space is the Place: Effects of Continuous Spatial Structure on Analysis of Population Genetic Data

    HTML 7 3

Repositories

Showing 10 of 27 repositories
  • ReLERNN Public

    Recombination Landscape Estimation using Recurrent Neural Networks

    kr-colab/ReLERNN’s past year of commit activity
    Python 55 MIT 11 4 0 Updated Apr 2, 2025
  • relernn_nextflow Public

    Nextflow pipeline to run ReLERNN

    kr-colab/relernn_nextflow’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Mar 21, 2025
  • popgensbi_snakemake Public

    Snakemake workflow for popgensbi

    kr-colab/popgensbi_snakemake’s past year of commit activity
    Jupyter Notebook 0 MIT 1 3 2 Updated Mar 20, 2025
  • diploSHIC Public

    feature-based deep learning for the identification of selective sweeps

    kr-colab/diploSHIC’s past year of commit activity
    Python 54 MIT 14 7 2 Updated Mar 19, 2025
  • popvae Public

    genotype dimensionality reduction with a VAE

    kr-colab/popvae’s past year of commit activity
    Python 44 9 3 2 Updated Mar 11, 2025
  • disperseNN2 Public

    estimating dispersal distance from georeferenced polymorphisms

    kr-colab/disperseNN2’s past year of commit activity
    Python 4 MIT 2 7 0 Updated Mar 4, 2025
  • spatial_sweeps Public
    kr-colab/spatial_sweeps’s past year of commit activity
    HTML 1 0 0 0 Updated Feb 10, 2025
  • locator Public

    deep learning prediction of geographic location from individual genome sequences

    kr-colab/locator’s past year of commit activity
    Python 49 18 8 2 Updated Jan 20, 2025
  • msUtils Public

    A collection of C utilities for working with ms-formatted output files. Code is fast, flexible, and has many stats implemented

    kr-colab/msUtils’s past year of commit activity
    C 1 MIT 1 0 0 Updated Dec 13, 2024
  • barnacle_simulation Public

    We are building a biologically and ecologically realistic SLiMulation of barnacles.

    kr-colab/barnacle_simulation’s past year of commit activity
    Slim 2 0 0 0 Updated Nov 15, 2024
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