Add pull request template for contributions

.github/pull_request_template.md

@@ -0,0 +1,51 @@
+<!-- This template is here to help you structure your PR, but feel free to adapt it to your needs. Not all sections may be relevant for your contribution. -->
+
+## Description
+
+<!-- Briefly describe what this PR does and why -->
+
+## Related issue
+
+<!-- Link to relevant issue if applicable -->
+Closes #
+
+## What changed
+
+<!-- List the main changes -->
+
+- 
+- 
+
+## Testing
+
+<!-- Describe how you tested your changes -->
+
+**Test environment:**
+
+- Dataset used:
+- Key parameters:
+
+**Results:**
+
+- 
+
+## Documentation
+<!-- Mark the relevant option with an "x" -->
+
+- [ ] Added/updated code comments
+- [ ] Added/updated docstring
+- [ ] Updated README or docs if needed
+- [ ] Added example usage (if relevant)
+
+## Checklist
+<!-- Mark the relevant option with an "x" -->
+
+- [ ] My code follows the project guidelines
+- [ ] Complex logic is commented
+- [ ] No unnecessary files or debug code included
+- [ ] My PR is targeting the `dev` branch
+
+## Additional notes
+
+<!-- Any other context, dependencies, or things reviewers should know -->
+

VERSION

@@ -1 +1 @@
-0.6.0
+0.6.1

docs/developer/git.md

@@ -97,44 +97,38 @@ You've done the hard work - now let's get it merged!
 
 ### PR Title and Description
 
-Write a clear title that summarizes your change and use the PR template to provide context:
+Write a clear title that summarizes your change and use the PR template to provide context.
 
-```markdown
-## What does this PR do?
-
-Adds a new module for detecting CRISPR-Cas systems in bacterial genomes using HMM profiles.
-
-## Why is this needed?
-
-Many users requested CRISPR detection capabilities. This addresses issue #123.
-
-## What changed?
-
-- Added `panorama/crispr/detector.py` with detection logic
-- Added HMM profiles for Cas proteins
-- Added unit tests (coverage: 95%)
-- Updated user documentation with examples
+```{important}
+If your PR addresses an issue, link it! Use these keywords in your PR description:
+- `Fixes #123` - Automatically closes issue when PR merges
+- `Closes #123` - Same as above
+- `Related to #123` - Links without closing
+```
 
-## How to test?
+### For reviewer
 
-pytest tests/test_crispr.py
-panorama detect_crispr --pangenome examples/ecoli.h5
+Before to validate the commit change, you should check the elements in the following template for reviewer.
 
-## Related Issues
+```md
+## Quick Review
 
-Closes #123
-Related to #456
+### ✅ Checks
+- [ ] Code runs correctly
+- [ ] Logic makes sense
+- [ ] No obvious bugs
+- [ ] Comments help understand the code
 
-## Version
+### 💬 Feedback
+<!-- Your comments here -->
 
-Updated VERSION from 1.2.5 → 1.2.6
+**Status:** ✅ Approved / 🔄 Suggestions / ❌ Changes needed
 ```
 
-```{important}
-If your PR addresses an issue, link it! Use these keywords in your PR description:
-- `Fixes #123` - Automatically closes issue when PR merges
-- `Closes #123` - Same as above
-- `Related to #123` - Links without closing
+```{tip}
+You can add this template direclty in your saved replies (Go to your Settings->Saved replies)
+
+See [Using saved replies documentation](https://docs.github.com/en/get-started/writing-on-github/working-with-saved-replies/using-saved-replies)
 ```
 
 ## Keeping Your Branch Updated