Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Spoa upgrade #81

Draft
wants to merge 8 commits into
base: master
Choose a base branch
from
Draft

Spoa upgrade #81

wants to merge 8 commits into from

Conversation

tbrekalo
Copy link
Member

Descriptions

The aim of this PR is to improve racon performance with the new SPOA version which takes into a count node coverage when calculating the consensus. For more information see:

Tasks

  • upgrade to c++17 to allow support for newer SPOA versions

    • upgrade CMake
    • upgrade meson
    • upgrade ci scripts
  • upgrade SPOA version

    • CMake
    • git submodules for meson
  • utilize min_coverage

    • add command line argument
    • add min_coverage parameter to polisher and use it for consensus generation

    Results

  • TODO

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant